Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0462 ATGAAGCGAACACGATCCCAAACAAAACCCTATTCAAATCCAAACGATTCACTTTCCTCTTCCAAAATCTCCTTCCGCGCGCGAAAAATCCGACGAACCCCCCTCATCACCAACAAAAACCCTAACCCAGAACCAGAGACTTCATCAAAACCCTCTCCCACCACCATCTCAAAGCCGTTAACCGCCACCGGCGAAATCGAAGCCGCCCTCAACCACCTCCGCGCCGCCGATCCCCTCTTAGCCAACTGCATCGACTCTCTCCCTCCTCCTCACTTCTCAAACGACGTCGTCGTCACCCCCTTCTTCTCCCTCACGAAGAGCATCATCTCCCAGCAACTCTCCAACAAAGCAGCCTCCGCCATCGAATCCCGCTTCGTCTCCCTCTGCGGCGGCCGCGATTCGGTTCTCCCCGACGTCGTTTTGTCCTTGTCTCCCGTTCAGCTCCGGCAGGTTGGAATCTCCGGACCCAAAGCGACTTACCTCCACGACCTCGCCACCAAGTACATCGATGGGATTCTCTCGGATTCTACTATCCTGCAAATGGACGATGAGACGCTGCACGAGAAGCTTACCTTGGTTAAGGGAATTGGGCCTTGGTCTGTTCACATGTTCATGATTTTCACGCTTCACCGCCCTGATGTTCTTCCTGTTGGGGACCTCGTTGTTCGGAGAGGAGTGGAGCGATTGTATGGACTTAAGGCATTGCCTGCTCCTTCCCTGATGGAACGATTGTGCCAGAAATGGAAGCCTTATAGCTCTGTTGCCTCTTGCTACATGTATAAGTTTATGGATGCTAAAGGGGTGTTGCCATTGCCAGCCACCACTATCACAGATCATCAACAGATGGGTGGTGGGGAGTGA 861 0.5319 MKRTRSQTKPYSNPNDSLSSSKISFRARKIRRTPLITNKNPNPEPETSSKPSPTTISKPLTATGEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIESRFVSLCGGRDSVLPDVVLSLSPVQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDDETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMERLCQKWKPYSSVASCYMYKFMDAKGVLPLPATTITDHQQMGGGE* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0462 286 Pfam HhH-GPD superfamily base excision DNA repair protein 106 250 IPR003265 GO:0006284
Lja2g0462 286 Gene3D Hypothetical protein; domain 2 97 211 - -
Lja2g0462 286 MobiDBLite consensus disorder prediction 35 58 - -
Lja2g0462 286 Gene3D - 71 261 - -
Lja2g0462 286 PANTHER HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN 5 271 - -
Lja2g0462 286 CDD ENDO3c 104 262 IPR003265 GO:0006284
Lja2g0462 286 MobiDBLite consensus disorder prediction 1 58 - -
Lja2g0462 286 SUPERFAMILY DNA-glycosylase 98 260 IPR011257 GO:0003824|GO:0006281
Lja2g0462 286 SMART endo3end 109 264 IPR003265 GO:0006284
Lja2g0462 286 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 5 271 - -
Lja2g0462 286 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0462 Lja-Chr2 4221329 4223738 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0462 K01247 - mnt:21403226 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0462 2 4221329 4223738 Lja2g0462 2 4221329 4223738 ECH
Lja1g3593 1 44651122 44655441 Lja2g0462 2 4221329 4223738 ECH