Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3593 ATGGGCGAACCCCAATCCCTAACCCCAACCCAGATTGAACCTCACCCTCAGCCCCAATTACCTCCCTCCTCCGCCCCACCATCCACCGTCGCCGCCGCCATCATTACCCCAGACCCCGAACTCACCAATGTCCCCCCGCCAAACCATGCCCCGGCAACCAAAATCCCCCTCCGCCCTCGCAAGATCCGGAAGCTCTCTCCTGAAACGACGACCACCACCACCACCACCTCCGAATCCCAATCAGAAACCCCAAAACCCACCGCCACCGGCAAGTCAGCCACCGGGCGCAACAACAACAAGGCGGCTCAACAGCAGCAGCGAACCCTAGCGGCACCCAGAGTGATTGCCAGGCCACTTTCCTGCGAAGGCGAGGTGGAGATCGCACTGCGCTATCTCCGCAACGCAGACCCTCTCCTCTCCCCTCTCATCGACATTCATCAGCCTCCTACCTTCGACAGCTTCAACACCCCATTCCTGGCGCTAACGCGCAGCATCTTGTACCAGCAGCTGGCGTATAAAGCCGGTACCTCGATATATACCCGATTCATCGCCTTATGTGGTGGGGAAGCCGGTGTTGTTCCGGAAACTGTGCTTGCGTTAACTCCTCCGCAGCTTCGCCAGATTGGGGTTTCGGGGCGGAAGGCGAGTTATCTTCATGATTTGGCTAGGAAATACCAGAATGGGATACTCTCTGATTCTGCAATTGTAAATATGGATGATAAGTCGCTTTTTACTATGCTCACCATGGTTAATGGAATTGGGTCTTGGTCTGTTCACATGTTCATGATATTCTCACTGCATAGACCTGATGTTCTTCCCATCAATGATCTCGGTGTTCGCAAAGGGGTTCAGTTTCTTTATGGTCTTGAAGACTTGCCTCGGCCCTCTCAGATGGACCAGTTGTGTGAGAAGTGGAGGCCTTATCGCTCGGTTGCTTCCTGGTATATGTGGAGATTTGTTGAAGCAAAGGGAACTCCTTCAAGTGCCGTGGCAGTGGCTACCGGTGCTAGCTTGCAACACCACCAGCAGGAGCAGCAACAACAACAGCAGCAGCAGCAGCACCCTCCACAGCCACAGCTTCTGGATCCCATTAACAGCATGTTTAATCTCGGGGCCACCTGTGCTTGGGGACAATGA 1137 0.5462 MGEPQSLTPTQIEPHPQPQLPPSSAPPSTVAAAIITPDPELTNVPPPNHAPATKIPLRPRKIRKLSPETTTTTTTTSESQSETPKPTATGKSATGRNNNKAAQQQQRTLAAPRVIARPLSCEGEVEIALRYLRNADPLLSPLIDIHQPPTFDSFNTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGEAGVVPETVLALTPPQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQFLYGLEDLPRPSQMDQLCEKWRPYRSVASWYMWRFVEAKGTPSSAVAVATGASLQHHQQEQQQQQQQQQHPPQPQLLDPINSMFNLGATCAWGQ* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3593 378 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 40 372 - -
Lja1g3593 378 SUPERFAMILY DNA-glycosylase 148 319 IPR011257 GO:0003824|GO:0006281
Lja1g3593 378 MobiDBLite consensus disorder prediction 335 362 - -
Lja1g3593 378 MobiDBLite consensus disorder prediction 1 110 - -
Lja1g3593 378 MobiDBLite consensus disorder prediction 66 110 - -
Lja1g3593 378 CDD ENDO3c 158 319 IPR003265 GO:0006284
Lja1g3593 378 Gene3D Hypothetical protein; domain 2 156 268 - -
Lja1g3593 378 Pfam HhH-GPD superfamily base excision DNA repair protein 163 306 IPR003265 GO:0006284
Lja1g3593 378 Gene3D - 131 318 - -
Lja1g3593 378 SMART endo3end 166 321 IPR003265 GO:0006284
Lja1g3593 378 PANTHER BNAC05G15000D PROTEIN 40 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3593 Lja-Chr1 44651122 44655441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3593 K01247 - gmx:100790760 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3593 1 44651122 44655441 Lja2g0462 2 4221329 4223738 ECH
Lja1g3593 1 44651122 44655441 Lja1g3593 1 44651122 44655441 ECH