Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0312 ATGAAGAATGGTAACACAAAACTCATCCTCCTCCACCCTTACATCCAAAAGCAAGGAACCTCAAATCGCTTATGGCTTCTAGCTTTCATTTCATTCTTCACCCTTGCCTTCCTTGCCACCTTAATCTACACAAGAGAGTCCACCTCTGCCATCACCGCCGCCGCCTCTGCCTCCTCCCCTGTTTCAGGTTTCAGCAGCACACCTTTACCCTCCATTGTAATCAACACTCTCCTCCACTATGCCTCAAAATCAAACGACACCTACCACATGCCTTACTCAGATATCAAACCAATCTCCGACGTGCTCAGAAAGTGCTCCACACCCTGCAATTTCCTCATCTTTGGCCTCACCCAAGAGACCCTCCTCTGGAAAGCCCTGAACCACAATGGCAGAACCGTCTTCATCGACGAAAACCGCTACTACGCCGCATATTTCGAAGAAAAGCACCCAGAGATTGACGCCTATGATGTTCAGTACACCACCAAGAGAAGTGAGATGAAGGAGCTCATAGCCATGGCAAAAGAACAGGTAAAAAATGAGTGCAGGCCAGTGCAGAATCTTCTGTTTTCAGAGTGCAGGCTTGGGCTCAATGACCTTCCCAATCATGTATATGAGGTGGATTGGGATGTCATCTTGGTGGATGGACCCCGGGGTGACTGGCCTGATGCTCCTGGCAGAATGTCGGCGATCTTCACCGCGGGCGTTCTCGCCAGGAGCAAGAAGGGTGGGAATCCAAAGACACATGTGTTTGTGCATGACTTCTGTGGAAAAGTTGAGAAGACTTGTGGGAATGAGTTTTTGTGCAAAGGGAATTTAGTGGAGGCAACTGGGACTTTGGGACACTATGTGCTTGAAAAAATGGATGAAAGTAGCGTTCATTATTGTAAGAATCACTCATCATCTTCAGGAACTGCTTCATCATCTTAA 927 0.479 MKNGNTKLILLHPYIQKQGTSNRLWLLAFISFFTLAFLATLIYTRESTSAITAAASASSPVSGFSSTPLPSIVINTLLHYASKSNDTYHMPYSDIKPISDVLRKCSTPCNFLIFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEKHPEIDAYDVQYTTKRSEMKELIAMAKEQVKNECRPVQNLLFSECRLGLNDLPNHVYEVDWDVILVDGPRGDWPDAPGRMSAIFTAGVLARSKKGGNPKTHVFVHDFCGKVEKTCGNEFLCKGNLVEATGTLGHYVLEKMDESSVHYCKNHSSSSGTASSS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0312 308 PANTHER OS11G0490100 PROTEIN 3 300 IPR006514 GO:0045492
Lja2g0312 308 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 69 295 IPR006514 GO:0045492
Lja2g0312 308 PANTHER PROTEIN IRREGULAR XYLEM 15 3 300 - -
Lja2g0312 308 Pfam Polysaccharide biosynthesis 94 281 IPR021148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0312 Lja-Chr2 2823897 2825313 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0312 - - gmx:100803555 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0312 2 2823897 2825313 Lja4g3372 4 63765796 63767175 ECH
Lja2g0312 2 2823897 2825313 Lja2g0312 2 2823897 2825313 ECH
Lja2g0312 2 2823897 2825313 Lja4g3372 4 63765796 63767175 PCT