Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0099 ATGGCTTCTCCTTCTCCCCTGTTTCTGCTCTGCTTCATGCTCTGCATTTCACACTCATATCAAATGGTCCTACTCCCCTTAACACACTCAATTTCCAAATCCCAATTCAACAGTACCCACCACCTCCTCAAAACCACCTCAACCCGTTCAGCAGCACGCTTCCAACACCACCACCACCGCCACCAACAACACCAACTCTCTCTGCCACTTTCTCCGGGAAGTGACTACACCCTGTCCCTGAACTTCGGTGGCTCCCAACCCATAACCCTCTACATGGACACCGGCAGCGACCTCGTGTGGTTCCCCTGCGCTCCCTTTGAGTGCATGCTCTGCGAAGGAAAACCAGACACGCCCAAACCCGCCAACATCACAAAAGCCCACACCGTTTCCTGCCAATCCCCTGCATGCTCCGCCGCACACTCTTCCATGCCCCACCGTGATCTCTGCGCTATATCTCACTGCCCCTTAGACTCAATTGAAACCTCTGATTGCTCCAAATTCACATGCCCCCAGTTTTACTACGCTTATGGCGACGGAAGCTTCATCGCTAAACTCTATCACCAAACGCTCTCAATATCTTCTCTCTCGCTTAAGAACTTCACCTTTGGCTGTGCCCACACCGCCCTCGCCGAACCCACCGGCGTCGCCGGCTTCGGCCGTGGTCTTCTGTCACTCCCTGCTCAGCTCGCTACCTTCTCACCCCAACTGGGTCATCGCTTTTCTTACTGTTTGGTCTCTCACTCTTTCGACGGAGAGCAAGCTCGGCGACCGAGTCCACTCATTCTCGGACACCACGACGGTGCTGGTGCTGGGGAAGAAAAACCATCTGAGTTTGTGTACACCTCCATGATTGCGAACCCCAAGAACCCTTACTACTACTGTGTGGGGCTAGTCGGAATCTCTGTCGGGAACAGGATTCTTCCGGCGCCGGCGAAGCTGCAGAGCGTTGACAGCAAGGGGAACGGCGGTGTGGTGGTTGATTCCGGCACCACGTTCACGATGTTGCCGGCGAGTTTGTACAACGCGGTGGTGGGTGAGTTCGACCGCCGAGTCGGGCGAGTCCACAAGCGAGCGAGTGAGGTTGAGGACAAAACGGGTCTCGGGCCGTGTTATTATTTGGACGGGTTGGTACAGGTGGTGCCCACAGTGACGTTGCATTTTGTGGGGAATAATTCCAATGTGGTGCTCCCTAGGAAGAACTACTTCTATGAGTTTATTGACGGCGGTGATGGTGTGAGGGCGAAGGGGAAAGTGGGGTGTATGATGCTGATGAACGGTGGTGATGAGTCTGAGTTGGAGGGTGGGCCCTGGGCCACGCTTGGGAATTACCAACAGCAAGGGTTTGAGGTTGTGTACGATTTGGAAGAGCAGCGCGTGGGTTTTGCTAAGAGACAATGCGCGTCGCTTTGGGATAGCCTCAACCATGACAAAAACTAG 1437 0.5456 MASPSPLFLLCFMLCISHSYQMVLLPLTHSISKSQFNSTHHLLKTTSTRSAARFQHHHHRHQQHQLSLPLSPGSDYTLSLNFGGSQPITLYMDTGSDLVWFPCAPFECMLCEGKPDTPKPANITKAHTVSCQSPACSAAHSSMPHRDLCAISHCPLDSIETSDCSKFTCPQFYYAYGDGSFIAKLYHQTLSISSLSLKNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATFSPQLGHRFSYCLVSHSFDGEQARRPSPLILGHHDGAGAGEEKPSEFVYTSMIANPKNPYYYCVGLVGISVGNRILPAPAKLQSVDSKGNGGVVVDSGTTFTMLPASLYNAVVGEFDRRVGRVHKRASEVEDKTGLGPCYYLDGLVQVVPTVTLHFVGNNSNVVLPRKNYFYEFIDGGDGVRAKGKVGCMMLMNGGDESELEGGPWATLGNYQQQGFEVVYDLEEQRVGFAKRQCASLWDSLNHDKN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0099 478 Gene3D Acid Proteases 270 472 IPR021109 -
Lja2g0099 478 ProSiteProfiles Peptidase family A1 domain profile. 76 462 IPR033121 -
Lja2g0099 478 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 6 475 - -
Lja2g0099 478 CDD pepsin_A_like_plant 76 466 IPR034161 -
Lja2g0099 478 PANTHER ASPARTYL PROTEASES 6 475 IPR001461 GO:0004190|GO:0006508
Lja2g0099 478 SUPERFAMILY Acid proteases 71 471 IPR021109 -
Lja2g0099 478 Gene3D Acid Proteases 61 263 IPR021109 -
Lja2g0099 478 Pfam Xylanase inhibitor C-terminal 293 462 IPR032799 -
Lja2g0099 478 Pfam Xylanase inhibitor N-terminal 76 263 IPR032861 -
Lja2g0099 478 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 324 335 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0099 Lja-Chr2 769476 771430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0099 45 469 Miscellaneous Gene Families AT1G77480 25.607 2.38e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0099 - - gmx:100807884 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0099 2 769476 771430 Lja2g0099 2 769476 771430 ECH
Lja2g0099 2 769476 771430 Lja4g2547 4 32514900 32516379 PCT