Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0083 ATGCTCTGGTGGCAATTAGTACATCTCACTTGTGTGATTCAGCTCACATTTTGTGCACTTTTGTGCGTCATTTGGTCCATCCACTCCTCTTTGTGTACTTTTCCATCCCACTGCCACAAGCAATCTCTCCATTGTAAACCCATTTTCCTAATTCTCATGGGAACCAGCATTGGTTGTTCCTCTGATCCTAATGACTCTCAAGATCTCCCTTGTTCTTATGTTCCTGTACCCGATGGCCCCCACTCCGCCAGAGCTCCGTCGACGGAGCCTCATAGCCAGCTGAAGGGAGTGCTTTTGATCTCATGCGGGTTGCTCATGCTAGTGCTATTGGTGGCCTTCAATGGCTACAGGGCCTCAAATAGACATGAATATGATGATGGGAATGTGTCATTGCCAACGTTAACATCCAATGAAGAATTATTTGCTTGGCCAACATGGCAGCCTGTTCCACGTGGTGTATCTGCAGGGGTCTCTGAGAAGTCCAATAGGTTACTCAACTCCAACATTAATAATAGGGAATCATATCCTTGGAACAACAGCATGCTGTCATGGCAAAGAACAGCTTTCCATTTCCAGCCTGAGAAGAATTGGATGAATGATCCTAATGGTCCAATGTACTACAAGGGATGGTACCATTTCTTCTACCAGTACAATCCCAAGGGTGCAGTTTGGGGAGACATCATCGTTTGGGGACACGCCGTGTCAAGGGACTTGATCCACTGGCTTCACCTTCCAGTGGCAATGGTCGCCGACGAATGGTACGACAAAAATGGTGTGTGGACTGGCTCAGCCACCATTTTACCCAATGGTGAAGTGATCATGTTGTACACCGGTTCAACCAACGACTTGGTGCAGGTCCAGAACCTTGCCTACCCTGCAGACCCATCTGATCCCTTACTCATTGATTGGATCAAATACCCTGGAAACCCAGTTCTGTTCCCACCACCAGGTATCGGTACCAAGGATTTTCGTGACCCAACCACCGCTTGGCTCACCTCTGAAGGAAAATGGCGCATTTCCATCGGCTCGAAGCTTAACAGAACTGGAATCGCCTTGGTTTATGACACAGAGGATTTCAAGACATTTGAGCGTGTTGAGGGAATCCTTCATGCTGTGCCTGGCACTGGCATGTGGGAGTGTGTTGATTTCTTCCCTGTTTCTTCTACTGTTGAAAATGGCTTGGACACATCATTTAATGGGGCTGGTGTGAAGCATGCGATGAAGGTTAGCCTAGATGATGATAGACATGATTATTACGCGCTGGGGAGTTATGATGAAAACAATGTCAAGTTCACACCAGATGATTTCAAGAACGATGTTGGTATTGGATTGAGGTATGACTATGGTGTCTTTTATGCATCCAAGACATTTTATGATCAGAGGAAAAAAAGGAGAGTGCTGTGGAGTTGGATTGGAGAGTCGGATAGTGAACATGCTGATGTTGCCAAAGGTTGGGCATCGGTTCAGGGTATTCCAAGAACAGTGATGCTTGATAAAAAAACCGATAGCAACTTGCTTCAATGGCCTGTTGCAGAGGTGGAGAGTTTGAGATTGAAAAGTGACAAGTTTGAGAATCTAAAGGCGAAGCCAGGGACAGTGGTGCCCCTAGACATTGCTACAGCCACACAGTTGGATATTGTGGCTGAGTTTGAGATAGATAAGGAGGCGTTGGAGAAGACAGCCCGATCCAATTTGGAGTACAAGTGCGATAGCAGTGGTGGATCAGCTGAACGTGGTGCCTTGGGACCTTTTGGTCTTCTGGTTTTAGCGGATGATGGTCTTTCTGAATATACTCCTGTCTACTTCTATATGGTTAAAGGAAGAGATGGACATCTCAAGACTTACTTCTGCTCTGATCAATCAAGGTCTTCTCTGGCGACTGATGTTGATAAGAATATCTTTGGAAGCTTTGTTCCAGTACTAAAAGATGAAAAGATGTCTATAAGGATATTGGTGGACCATTCTATAGTGGAAAGCTTTGCTCAAGGTGGAAGGACGTGCGTGACATCCCGGGTATATCCAACAAGGGCAATGTATGGAACCGCTCGATTGATGTTGTTCAATAATGCTACTGAGGCTACTGTGACTGCCTCACTAAAGGTTTGGCAGATGAACTCTGCATTCATACGACCATTCCACCCTGACCAGAGGACATAA 2157 0.4604 MLWWQLVHLTCVIQLTFCALLCVIWSIHSSLCTFPSHCHKQSLHCKPIFLILMGTSIGCSSDPNDSQDLPCSYVPVPDGPHSARAPSTEPHSQLKGVLLISCGLLMLVLLVAFNGYRASNRHEYDDGNVSLPTLTSNEELFAWPTWQPVPRGVSAGVSEKSNRLLNSNINNRESYPWNNSMLSWQRTAFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPKGAVWGDIIVWGHAVSRDLIHWLHLPVAMVADEWYDKNGVWTGSATILPNGEVIMLYTGSTNDLVQVQNLAYPADPSDPLLIDWIKYPGNPVLFPPPGIGTKDFRDPTTAWLTSEGKWRISIGSKLNRTGIALVYDTEDFKTFERVEGILHAVPGTGMWECVDFFPVSSTVENGLDTSFNGAGVKHAMKVSLDDDRHDYYALGSYDENNVKFTPDDFKNDVGIGLRYDYGVFYASKTFYDQRKKRRVLWSWIGESDSEHADVAKGWASVQGIPRTVMLDKKTDSNLLQWPVAEVESLRLKSDKFENLKAKPGTVVPLDIATATQLDIVAEFEIDKEALEKTARSNLEYKCDSSGGSAERGALGPFGLLVLADDGLSEYTPVYFYMVKGRDGHLKTYFCSDQSRSSLATDVDKNIFGSFVPVLKDEKMSIRILVDHSIVESFAQGGRTCVTSRVYPTRAMYGTARLMLFNNATEATVTASLKVWQMNSAFIRPFHPDQRT* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0083 718 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 77 713 - -
Lja2g0083 718 Gene3D Glycosyl hydrolase domain; family 43 194 520 IPR023296 -
Lja2g0083 718 Pfam Beta-fructofuranosidase, N-terminal domain 72 182 IPR021792 GO:0004564
Lja2g0083 718 Gene3D - 521 704 - -
Lja2g0083 718 SUPERFAMILY Arabinanase/levansucrase/invertase 183 510 IPR023296 -
Lja2g0083 718 SMART glyco_32 190 664 IPR001362 GO:0004553|GO:0005975
Lja2g0083 718 ProSitePatterns Glycosyl hydrolases family 32 active site. 190 203 IPR018053 GO:0004553|GO:0005975
Lja2g0083 718 Pfam Glycosyl hydrolases family 32 C terminal 512 703 IPR013189 -
Lja2g0083 718 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 77 713 - -
Lja2g0083 718 SUPERFAMILY Concanavalin A-like lectins/glucanases 509 708 IPR013320 -
Lja2g0083 718 CDD GH32_Fruct1-like 196 497 - -
Lja2g0083 718 Pfam Glycosyl hydrolases family 32 N-terminal domain 190 509 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0083 Lja-Chr2 624589 627909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0083 71 712 Glycoside Hydrolase AT1G12240 63.190 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0083 K01193 - gmx:100798772 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0083 2 624589 627909 Lja2g0083 2 624589 627909 ECH
Lja2g0083 2 624589 627909 Lja4g2519 4 31197237 31201661 PCT