Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6001 ATGGTAGAAGGCCAAAGGGAAGAAGAAAAAGAAGAACAACAACAACCCAAAAGAAGTATGAAGAAAGCCCTTCTGGTACTAAACTCCATCCTCTTATCCATAGGCACCTCCGGCGGCCCACTCGTGATGCGTCTCTACTTCATCCACGGCGGCAAACGCATGTGGCTCTCAAGCTTCCTTGAAACCGCTGCCTTCCCCATCATTCTCCTTCCCCTAACAATCTCCTACCTCCACCGCCGCCACTCAACACCCGCCACAAAACCAAAGCTCTTCTCCATGAAACCACCTTTATTCCTGGCCTCGGCAGTCATCGGCATCCTCACCGGCCTTGATGACTACCTCTACGCCTGTGGGGTAGCTCGCCTTCCCGTGTCGACATTCTCTCTGATTCAAGCCTCCCACCTCGCCTTCACCGCCGTCTTCGCGTACCTTCTAGTGAGGCATAAGTTTACGGCGTACTCAGTGAATTCCATCGTGTTGCTGACCCTTGCTGCGGTGGTTTTGGGTATCCGTTCGGGCGGGGATCGTCCCGCCGGTGAGTCGACTCGGGAGTACGTGATAGGGTTTGTTATGATAGTGGCGGCTGCGGCTTTGTATGGGTTTGTTTTGCCGTTGATGGAGTTGGTGTACAAGAAGACCAAACAAGTTGTTACTTACCATCTGGTTATGGAGATTCAGCTCGTTATGTGCTTCTTTGCTACTTTGTTCTGCACTGTTGGGATGATCATAAACAATGACTTCAAGGTGATTCCAAGAGAAGCGAGGGAATATGAGCTTGGGGAAACTAAGTACTATATTGTGCTAGTGTGGAGTGCTATAATGTGGCAGTTTTTCTTCTTGGGAGCTATAGGTGTTATCTTCTGCGCTTCCTCGTTGTTGTCTGGCATTACAATTGCTGCGATTCTTCCTGTTACTGAAGTGTTAGCTGTTATTATATACAAAGAGAATTTCCAAGCAGAGAAGGGGCTTGCTTTGGTGCTCTCTCTTTGGGGTTTTGTATCCTACTTTTATGGTGAGTTCGAAGAAGCCAGGAAAAAGAAGGAAATAGAGTTGCCTCAAAGTTTTCATCTGAATAATACGTGA 1083 0.482 MVEGQREEEKEEQQQPKRSMKKALLVLNSILLSIGTSGGPLVMRLYFIHGGKRMWLSSFLETAAFPIILLPLTISYLHRRHSTPATKPKLFSMKPPLFLASAVIGILTGLDDYLYACGVARLPVSTFSLIQASHLAFTAVFAYLLVRHKFTAYSVNSIVLLTLAAVVLGIRSGGDRPAGESTREYVIGFVMIVAAAALYGFVLPLMELVYKKTKQVVTYHLVMEIQLVMCFFATLFCTVGMIINNDFKVIPREAREYELGETKYYIVLVWSAIMWQFFFLGAIGVIFCASSLLSGITIAAILPVTEVLAVIIYKENFQAEKGLALVLSLWGFVSYFYGEFEEARKKKEIELPQSFHLNNT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6001 360 PANTHER OS09G0467300 PROTEIN-RELATED 10 356 IPR030182 GO:0015211|GO:0016021
Lja1g6001 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 92 172 - -
Lja1g6001 360 Pfam Purine nucleobase transmembrane transport 24 345 - -
Lja1g6001 360 PANTHER PURINE PERMEASE 10 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6001 Lja-Chr1 110842491 110844479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6001 20 349 Organic Solute Cotransporters AT1G28220 55.589 1.77e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6001 - - vra:106764151 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6001 1 110842491 110844479 Lja1g6001 1 110842491 110844479 ECH
Lja1g6001 1 110842491 110844479 Lja1g4286 1 55182959 55184799 PCT