Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5971 ATGTCCAGGCCTCTACATCGAGGTGTGTCTGGATTTCGTGTCCCTGACAGTAGCAATGACTTGTGGGACTCTCAATCCAAAGATAAACCAGAAAGAGAAGATTTTGATAAGAGGGGTTCTTCAGATCATAGCCCTCTAGCACTGAAATTTCCTTTGAAGGTTCTTTTTTCTGATAATAACAACAATTCTCCTTCCAAATATGGCAATGGAATCACTGAGAATGGTTTTTCATCTGATCCATTCTTTGTTGGATCGCCAAGAACCCGGGTTAAGTTGATGCTGCTTTCATTGAAGATTAGTTTAGTGTTTATAGTTGTTCTTGCTCTTGTTGGATCTTTTTGGTGGACCCTATCTATGTCATCCTCATCAAGAGGTAGAGTTTACCATGGTTATAGAAGGCTCCAGGAGAAGCTGGTTACAGACCTGTTGGATGTTGGTGAGTTATCTCATGGCTCCTCCAAGGTGAAAGAATTGGAATTCTGTTCTCCTGAGCTGGAAAATTTTGTTCCTTGCTTTAATGTTTCTGATAATTTAGCTTCTGGTGGCAACGAGTTGGACCGGAAATGTGACGGCGAGCTCAGGCAAAGTTGTTTGGTCCTCCCACCTGTGAATTACAAAATTCCTCTTAGGTGGCCTACTGGAAGAGATGTTATCTGGATTGCTAATGTGAAAATCACTGCACAGGAGGTTCTTTCTTCTGGAAGCTTGACCAAGAGAATGATGATGCTGGATGAAGAGCAAATTTCGTTTCGTTCAGCCTCTCTTATGTTTGATGGTGTTGAAGACTACTCACATCAAATCGCGGAAATGATTGGACTTAGAAATGAATCTTACCTTATACAAGCTGGGGTTCGAACCATACTAGACATAGGTTGTGGGTATGGTAGCTTTGGAGCGCACCTTTATCAAAGTCAACTTCTAACTATGTGCATTGCAAACTATGAGCCTTCTGGCAGTCAAGTTCAGCTCACTCTCGAGAGGGGTCTTCCTGCTATGATTGCTTCATTCACTTCAAATCAGCTGCCATATTCATCTCTGTCGTTTGATATGTTACATTGTGCTAGATGTAACATTGATTGGGACCAGAAAGATGGACATCTCTTGATTGAAGCCGATAGACTTTTAAGACCGGGTGGATACTTTGTCTGGACATCACCACTTACAAATGCTCGCAACAAAGAGAATCAGAAAAGGTGGAAGTTTGTGCAAGATTTTACAGAAAAGCTTTGCTGGGAAATGTTGTCACAGCAAGATGAAACCGTTGTATGGAAGAAAACTAGTAAAAAGAGTTGCTATTCTTCAAGAAAGCCTGGTTCCGTCCTTCCTTTGTGTGGTAGAGGTCTTGATGTGGAGTCTCCCTATTATCGCGAACTGCAAAATTGCATTGGAGGAACACAGAGCAGCCGTTGGGTTTCAATTGAAAAAAGAGAAAGATGGCCTTCTCAGGTTAACTTGAACAAGAACAACTTAGCAGCATATGGGTTACAGTCTGATGAATTAACTGAGGACTCTGACATGTGGAGAACAGCAGTACAAAATTATTGGTCACTCCTTTCGCCTATAATATTTTCTGATCATCCAAAGAGACCTGGTGAAGAGGACCCTTCACCGCCTTACAACATGTTCAGAAATGTGCTAGACATGAATGCTCATTTTGGTGGCTTCAATACTGCACTGTTGCAGGCTAGAAAGTCTGTGTGGGTCATGAATGTGGTCCCAATAAGTGGACTGAACTATCTTCCCTTGATCCAGGACAGAGGTTTCGTCGGCGTTTTGCATGATTGGTGTGAGGCCTTTCCAACATACCCGAGAACCTATGACTTGGTGCATGCAGCGGGACTTCTATCTCTTGAGACGTCCCAGCAGCGCAGATGCAACATGCTTGATATGTTCATTGAAATTGACAGGTTGCTTCGCCCAGAGGGTTGGGTTATAATTCGCGACACAGTTCCTTTAATAGAATCCGCTAGAGCTCTAACAACACAGCTGAAGTGGGATGCACGAGTTATAGAAATTGAAAGTGACAGCGATCAGAAACTCCTGATCTGCCAGAAACCTCTCATCAAGAGACATGCAAGCTACTAA 2085 0.4283 MSRPLHRGVSGFRVPDSSNDLWDSQSKDKPEREDFDKRGSSDHSPLALKFPLKVLFSDNNNNSPSKYGNGITENGFSSDPFFVGSPRTRVKLMLLSLKISLVFIVVLALVGSFWWTLSMSSSSRGRVYHGYRRLQEKLVTDLLDVGELSHGSSKVKELEFCSPELENFVPCFNVSDNLASGGNELDRKCDGELRQSCLVLPPVNYKIPLRWPTGRDVIWIANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESYLIQAGVRTILDIGCGYGSFGAHLYQSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSNQLPYSSLSFDMLHCARCNIDWDQKDGHLLIEADRLLRPGGYFVWTSPLTNARNKENQKRWKFVQDFTEKLCWEMLSQQDETVVWKKTSKKSCYSSRKPGSVLPLCGRGLDVESPYYRELQNCIGGTQSSRWVSIEKRERWPSQVNLNKNNLAAYGLQSDELTEDSDMWRTAVQNYWSLLSPIIFSDHPKRPGEEDPSPPYNMFRNVLDMNAHFGGFNTALLQARKSVWVMNVVPISGLNYLPLIQDRGFVGVLHDWCEAFPTYPRTYDLVHAAGLLSLETSQQRRCNMLDMFIEIDRLLRPEGWVIIRDTVPLIESARALTTQLKWDARVIEIESDSDQKLLICQKPLIKRHASY* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5971 694 MobiDBLite consensus disorder prediction 22 43 - -
Lja1g5971 694 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 202 389 IPR029063 -
Lja1g5971 694 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 14 691 IPR004159 GO:0008168
Lja1g5971 694 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 14 691 - -
Lja1g5971 694 MobiDBLite consensus disorder prediction 1 43 - -
Lja1g5971 694 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 168 685 IPR004159 GO:0008168
Lja1g5971 694 Gene3D Vaccinia Virus protein VP39 249 425 IPR029063 -
Lja1g5971 694 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 499 652 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5971 Lja-Chr1 109572266 109578283 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5971 K23870 - gmx:100805992 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5971 1 109572266 109578283 Lja1g5971 1 109572266 109578283 ECH
Lja1g5971 1 109572266 109578283 Lja1g5221 1 77855205 77866358 PCT