Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5221 ATGAACAGGCCTCTGCAAAGAGGTGTGTCTGGGATACGCGTCCCTGATAGCAGCCAGGACTCCTGGGACTCCCAGTCCAAAGATAAAGCCGAAAAGGAAGGTTTGGACAGAAGACTTAGCCCATTACCTTTGGGGTCTCCCTTTAAGTTGTTTTTTGCAGATAATTCTCATTCTAAATATGGCATTACTGAGAATAGTTTCTCATCTGATCCCTTCATTGTTGGGACTCCTAGAAATCGGCACCAGTTGATACTCTTTATTTTGAAGTTTAGTTTAGTATTTATAGTTATTCTTGCCCTTGCTGGATCTTTTTGGTGGACAATCTCAATTTCAACCACAACAAGAGGTCATATTTTTCATGGCTATAGAAGACTCCAAGAGAAACTTGTATCGGACCTGTTGGATATTGGGGAGATTTCTGATGCTCCCTCAAGGTTGAAGGAGCTTGAATTCTGTTCTCGGGAGTATGAAAACTATGTTCCTTGCTTTAATGTTTCTGACAATCTAGCTCGGGGTTACTCTGATGGCAATGAGTTTGGCCGGCAATGTGCCCATGAGCCCAGGCAAGATTGTTTAGTTCTCTCTCCAACGAATTACAAAATTCCTCTTCGATGGCCTACGGGAAGGGATGTTATCTGGGTTTCTAATGTTAAAATCACTGCACAACAGGTCCTTTCGTCTGGAAGCTTCACCAAGAGGATGATGATGCTTGATGAAGAGCAAATTTCCTTTCGCTCTGCCTCTCTTATGTTTGATGGTGTTGAAGACTACTCACACCAAATCGCAGAAATGATTGGACTCAGAAATGAATCTAACTTCATACAAGCAGGGGTTAGAACCATACTGGACATCGGTTGTGGATATGGTAGCTTTGGAGCCCACCTCTTTCACAGTCAGCTTTTAACTATGTGCATTGCAAACTATGAGCCTTCAGGCAGTCAAGTTCAACTTACACTTGAGAGGGGTCTTCCTGCTATGGTTGCTTCTTTCACTTCTAAGCAGTTGCCATATCCGTCTCTCTCCTTTGATATGGTGCATTGTGCTAGATGTGGCATTGACTGGGACCAGAAAGATGGCATTCTCTTGATTGAAGCTGATAGACTTTTAAAACCGGGTGGCTACTTTGTCTGGACGTCACCTCTGACAAATGCTCGTCGTAAAGACAGTCAGAAAAGATGGAAGTCTGTACTTGATTTTACTGAAAACCTTTGCTGGGACATGCTGTCACAGCAAGATGAAACTGTTGTATGGAAGAAAACTAGTAAAAGAAAGTGTTATAGTTCAAGAAAGAATGGTTCTCCCATTCCTTTATGTGGTAGAGGCTATGATGTGGAGTCTCCTTATTATCGTGAGCTGCAAAATTGCATAGGAGGAACACATAGCAGCCGTTGGATTTCCATCAATGAGAGGGCTAGGTGGCCTTCCAGGGATCACCTGAATAATGACGAGCTAGCAATATATGGATTGCAATCTGATGAATTTGCTGAAGATTCTGAAAGATGGAGAACAGCAATCCAAAATTACTGGTCTCTTCTATCACCTTTGATATTTTCTGATCATCCAAAGAGGCCTGGTGATGAGGACCCTCCACCACCTTACAATATGCTAAGAAATGTGCTAGACATGAATGCTCGTTTTGGTGGTTTTAATTCTGCATTGTTGCAAGCTGGAAAATCTGTGTGGGTCATGAATGTGGTGCCAATAAGTGGACCCAATCATCTTCCTTTGATCCAGGACCGGGGTTATGTTGGTGTTTTGCATGATTGGTGTGAGGCCTTCCCTACGTATCCTAGAACCTATGACCTGGTGCATGCAGCAGGACTTTTATCCTTTGAAACTGATCAGCAGCGTAGATGCAAGATGATTGATATATTCGTTGAAATTGACAGGTTACTCCGACCAGAGGGTTGGCTTATAATTCGCGATACAGTTCCTTTGATAGAATCAGCCAGAGCTCTCACAACCCGGCTAAAGTGGGATGCGCGAGTTGTAGAAATTGAAAGTGACAGCGATCAGAGACTCCTGATCTGCCAGAAGCCTTTCTTTAAAGAGACAAGCAAACCAATTCATTGA 2073 0.4308 MNRPLQRGVSGIRVPDSSQDSWDSQSKDKAEKEGLDRRLSPLPLGSPFKLFFADNSHSKYGITENSFSSDPFIVGTPRNRHQLILFILKFSLVFIVILALAGSFWWTISISTTTRGHIFHGYRRLQEKLVSDLLDIGEISDAPSRLKELEFCSREYENYVPCFNVSDNLARGYSDGNEFGRQCAHEPRQDCLVLSPTNYKIPLRWPTGRDVIWVSNVKITAQQVLSSGSFTKRMMMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFGAHLFHSQLLTMCIANYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMVHCARCGIDWDQKDGILLIEADRLLKPGGYFVWTSPLTNARRKDSQKRWKSVLDFTENLCWDMLSQQDETVVWKKTSKRKCYSSRKNGSPIPLCGRGYDVESPYYRELQNCIGGTHSSRWISINERARWPSRDHLNNDELAIYGLQSDEFAEDSERWRTAIQNYWSLLSPLIFSDHPKRPGDEDPPPPYNMLRNVLDMNARFGGFNSALLQAGKSVWVMNVVPISGPNHLPLIQDRGYVGVLHDWCEAFPTYPRTYDLVHAAGLLSFETDQQRRCKMIDIFVEIDRLLRPEGWLIIRDTVPLIESARALTTRLKWDARVVEIESDSDQRLLICQKPFFKETSKPIH* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5221 690 MobiDBLite consensus disorder prediction 1 40 - -
Lja1g5221 690 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 189 387 IPR029063 -
Lja1g5221 690 MobiDBLite consensus disorder prediction 22 38 - -
Lja1g5221 690 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 500 646 IPR029063 -
Lja1g5221 690 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 17 685 - -
Lja1g5221 690 Gene3D Vaccinia Virus protein VP39 238 419 IPR029063 -
Lja1g5221 690 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 17 685 IPR004159 GO:0008168
Lja1g5221 690 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 158 679 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5221 Lja-Chr1 77855205 77866358 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5221 K23870 - gmx:100812530 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5221 1 77855205 77866358 Lja1g5221 1 77855205 77866358 ECH
Lja1g5971 1 109572266 109578283 Lja1g5221 1 77855205 77866358 PCT