Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5970 ATGGCCTTGTTAAGGTGCTTCTCAATTAAGGGGAGTGTCAAACCTGCAAAAGAGGACTTTAACACTCTACTTGTCAAGCTACAACAAACAAGAACTTCATCAGAGACGACGCGTAATTTGGAGCCAACCACTTTTGATGTTTCAGTACCCCATGGTATTCAAAACAATTCAAGGTGCAAAGTGAGGGTTATGAGTCTTGAGAGTGAGAGTCCAGTGAAGGCTGAAGTAGACGAAGCTTATGAAGGGGAAGATGAGCATGAGGATTCACTCTCAATCAAGAGGGAACTCTCTGATTTTGATCTCCAAGACCAGGAAGCTGTGGCAACGAAAAAAGAGCATGATTCAATAGATAAAGAGATGAAGTATCCCAACCAAGCTAGCAATGAATTGGAAGAGAGAAATGATAGATACAACCAAAAGAGTGTGGATATAATCCAAAGTGGACATGTTAGTGATCCTGGGATTGTCAAGGCTGATTTCGGGGCTTCTCCAAAGCTCAAGCGATTCTGCTCTAACCTAGAAAAAGGGGATTTACTGAAGAACACAACTCTACCCTTGCCTCTTTTAAACTCAGGGTCTTTTGAGGACTTTCAGGAATTATCAGCGAATCCAATGGTTAAACTAGAAAGGTCAAAGTCTGTGATGAGTCACATAAGTGCTGATAGAGTGATGTTGAAACAACATTCTTTAAGTCAAATACTCCCTTCTGGAAGTAGAAAATTGTGGTGGAAGCTCTTCATGTGGAGCCACAGAAATATCCATAGAACTTTCTCTAGAAATTCATCACTTGTTCCTTCTAGTGCTGCTTTAAATAGTAAATGTGGGTACTCGTCGGACACCTTTGAACCTAAGCAAGGCAAGGCATTGAGACATGCGGAATCATCCGAGTCAATTACTACAGAAACCTTCAACAAAAGCAGCATTGGTAAAAATATTGATGATCAAAGGTGGAGTAGACAAATTGAAAGTTCTAGTTTTCGGGCCGGCAACCAGTGGTTTGCTTTCTCAACAGAATCAGAATTTTCCTGGGTGGATGCATGGGTGAAAGATCTTGAAATTCAGCAACCAATTCCTGAGGATGATTTGGATTATGGCAATGCCAGAAGTATTGTCTTCCCACCTACTCCTAATGAGGGCCGATCAATGACAAGAAGCACATCTCAGCTGAATCATCTAGATGCAAATCTCTCCAGAGATATTTTGAATGCCAATAGTTTGGTCCAGTGTCTAAATCCGGCTTCATCTGTTGCTCATATATCCGATGTTGGTATAAAAGTCATCCCTGCTATTTCGCACTTGACTAATCTTCGCTCTGTCAATCTATCAAACAATTTCATAGTGCACATCTCACCAGGATTTCTGCCGAAGTGTATTCATACACTTAATTTGTCAAGAAACAAGATCAGCACCCTTGAGGGCCTCAAAGAATTAACCCGGTTGCGGGTGCTTGACTTAAGTTACAACCGCATCTCAAGAATTGGTCAAGGATTGTCAAGTTGCAGACTCATCAAAGAGCTATACCTTGGGGGGAACAAGATAAGTGATATTGAGGGGTTACACAGGCTATTTAAGCTAACAGTTCTGGACTTGAGCTTCAACAAGATCACGGCAAAAAAAGCATTAGGCCAACTAGTGGCAAACTACAACTCACTTCAGGCCCTTAACCTGCTCGGAAATCCCATTCAAAGCAACATGAGTGATGACCAGTTAAGCAAGGCAGTGTCCAGTCTCCTTCCAAAGTTGGTGTACCTGAACAAGCAACCACTCAAGAGTCAGAGAGCACGCGAAATATTACCAGATAATGTTGCCAAAGCTGCACTTGGGAACAACAAGCGAGACTTTAGGAGAAGATTGAGAGTTAGCCAAGGAGGACCAATTTCCAGTAGAGGGCATAGAAGTAGTGCAATTGTTGCCCAGACCAGCAGGAATCGGACAAGGAGGTGA 1944 0.4239 MALLRCFSIKGSVKPAKEDFNTLLVKLQQTRTSSETTRNLEPTTFDVSVPHGIQNNSRCKVRVMSLESESPVKAEVDEAYEGEDEHEDSLSIKRELSDFDLQDQEAVATKKEHDSIDKEMKYPNQASNELEERNDRYNQKSVDIIQSGHVSDPGIVKADFGASPKLKRFCSNLEKGDLLKNTTLPLPLLNSGSFEDFQELSANPMVKLERSKSVMSHISADRVMLKQHSLSQILPSGSRKLWWKLFMWSHRNIHRTFSRNSSLVPSSAALNSKCGYSSDTFEPKQGKALRHAESSESITTETFNKSSIGKNIDDQRWSRQIESSSFRAGNQWFAFSTESEFSWVDAWVKDLEIQQPIPEDDLDYGNARSIVFPPTPNEGRSMTRSTSQLNHLDANLSRDILNANSLVQCLNPASSVAHISDVGIKVIPAISHLTNLRSVNLSNNFIVHISPGFLPKCIHTLNLSRNKISTLEGLKELTRLRVLDLSYNRISRIGQGLSSCRLIKELYLGGNKISDIEGLHRLFKLTVLDLSFNKITAKKALGQLVANYNSLQALNLLGNPIQSNMSDDQLSKAVSSLLPKLVYLNKQPLKSQRAREILPDNVAKAALGNNKRDFRRRLRVSQGGPISSRGHRSSAIVAQTSRNRTRR* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5970 647 PANTHER NISCHARIN RELATED 15 646 - -
Lja1g5970 647 Gene3D Ribonuclease Inhibitor 495 594 IPR032675 -
Lja1g5970 647 ProSiteProfiles Leucine-rich repeat profile. 524 545 IPR001611 GO:0005515
Lja1g5970 647 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 15 646 - -
Lja1g5970 647 ProSiteProfiles Leucine-rich repeat profile. 502 523 IPR001611 GO:0005515
Lja1g5970 647 ProSiteProfiles Leucine-rich repeat profile. 479 501 IPR001611 GO:0005515
Lja1g5970 647 SMART LRR_sd22_2 522 543 - -
Lja1g5970 647 SMART LRR_sd22_2 477 499 - -
Lja1g5970 647 SMART LRR_sd22_2 503 521 - -
Lja1g5970 647 SMART LRR_sd22_2 455 476 - -
Lja1g5970 647 MobiDBLite consensus disorder prediction 621 647 - -
Lja1g5970 647 ProSiteProfiles Leucine-rich repeat profile. 457 478 IPR001611 GO:0005515
Lja1g5970 647 MobiDBLite consensus disorder prediction 626 647 - -
Lja1g5970 647 Pfam Leucine-rich repeat 459 547 - -
Lja1g5970 647 Gene3D Ribonuclease Inhibitor 380 494 IPR032675 -
Lja1g5970 647 SMART LRR_typ_2 522 544 IPR003591 -
Lja1g5970 647 SMART LRR_typ_2 477 500 IPR003591 -
Lja1g5970 647 SMART LRR_typ_2 433 455 IPR003591 -
Lja1g5970 647 SUPERFAMILY Outer arm dynein light chain 1 423 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5970 Lja-Chr1 109543406 109545963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5970 426 589 Receptor kinase-like Gene Family AT5G56040 33.516 3.67e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5970 - - gmx:100813969 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5970 1 109543406 109545963 Lja1g5970 1 109543406 109545963 ECH
Lja1g5970 1 109543406 109545963 Lja1g5219 1 77825312 77829273 PCT