Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5219 ATGGCCATGTGTAGGTGTGTGTCTGTTTTGACTGGATGGAAGGAGAAGAACAAGGGCAGCAGCAAACGATATTCAAAAGGGGACCTTCACGCTCCACTTGTAAAAGAACAGCAGCCGAGGATGAGTCGTGATTTGAAGCCAGCCACCCTTGATGTTATAGTCTCCTGTGGTGTCCAGAAGAATTCGAAGTACAATGAGAAGATTATGAATCTTGAGAGTCCTGTGAAGACTGAAGCAGAGGATGCTTATGAGGGAGAAGATGAGCATGAAGATTCACCCTCCATCAAGAGGGAGCTTTCTGATTTTGATCTACAAGCCCATGAAGCTGTTGCAAGTGAAGGATGCGATCCAGCAGATAAAAAGGTAGAATACCCCAGTTTACATGAAAGCCAAGCCACCATTCAATTAGAAGACAAATACCATAAATACAGCAAAAAGAGTGTTGATTTAATCCAAAGTGGACATGTCAGTGATCCGGGGATTGGCAAGGGTGACTTCTGGGCTTCTCCAAAGCTCACGCGATCTTGCTCTAACCTGGAAAGAAGGGATGTACTGAGGAAGACACCTCATCACTTTCCATCTCCAAAGTCACAGTCTTTTGAGGATTTACAGGAATTATCAGTAAATCAGATGGGTGTTCTAGAAAGCCCCAGGTCTGTGATGACAGGCTGCAGTGCTGATAGAGTGATGTTGAAACGGCATTCATCAAGTCATGTTCTCCCTTCTGGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAACCACAGAAATATACACAGACCTCAGTTAAGCAAATTACCACAATCACATCCTGCAAGTGCTGCTTTAAATAGACAATGCGGGTACTCTTCGGACACCCTTGAACCTAAACATGGTAAGGCATGGAGACATGTGGAGTCACCCTCACCTGCGTCATCTTCTGGGGAGTACTTTGCCAAAAGTTTCAATGATAAAAATATCGACAACCAAAGGTGGAGCAGATTTCAGAAAGAAAGCACTAGTTTTTGGGCACAAAACCAATGGGTAGCTTTCTCAACAGAATCCTCCTCCTTTAACAGAGTGGATGAGTGGGTGAGAAATCTCGAAATCCAGCAGACACCTCAGGAGGAGGATTTTGATCATGACGATATTGGAAGCACTATCTTCCCACCTTCACCTGAAACTGGTAGATCAATGGCAAGAAGCACAACTCAGTTGGTTCGACATCCAGATGCAAATCTTTCAAAGGAAATTCTGATTGCCAATAGCGTGGTACAGTCTCTGAATCCAGCCTCAACTGTAGCTCACATATCAGGCATTGGAATAAAAGCCATCCCTGCTATTTCACACTTCTCCAGTCTCCGCTCTGTCAATTTGTCAAGCAATTTCATAGTTCACATCACACCTGCATTTCTCCCAAAGGGTATTCATACACTTAATTTGTCAAGAAACAAAATCAGCACCGTTGAGGGCCTCAAAGAATTAACCCGGTTGCGGGTACTTGACCTAAGTTATAATCGTATCTCAAGGATAGGACAAGGGTTATCAAATTGTACACAAATCAAGGAGCTATATCTTGCCGGAAACAAGATAAGTGATGTTGAGGGGCTGCACAGGTTACTGAAGCTAACAGTTCTGGACTTGAGCTTCAACAAGATCACAACAACAAAGGCATTGGGCCAGCTGGTGGCTAACTACAACACACTTCAGGCTCTGAATCTGCTTGGAAATGCAATTCAAAGGAACATCAATGATGACCAGCTGCGCAAAGCAGTTTGCGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAACCCTCAAAGGGCACGTGAAATACTCACTGATAGTGTAGCCAAAGCTGCACTAGGGAACAGCAACCGAGGCTCTTCCAAAAGAGCACTCAAGAAAGGCAGCCAAGGAGGACCGAGTTCGTCCAGTGTGCATAGAGGCAGTGCTAGTGGTGTCCAGAAAAGTAAACGGTCAAGGAGCCAAACTAAACATCATTAG 1998 0.4449 MAMCRCVSVLTGWKEKNKGSSKRYSKGDLHAPLVKEQQPRMSRDLKPATLDVIVSCGVQKNSKYNEKIMNLESPVKTEAEDAYEGEDEHEDSPSIKRELSDFDLQAHEAVASEGCDPADKKVEYPSLHESQATIQLEDKYHKYSKKSVDLIQSGHVSDPGIGKGDFWASPKLTRSCSNLERRDVLRKTPHHFPSPKSQSFEDLQELSVNQMGVLESPRSVMTGCSADRVMLKRHSSSHVLPSGSKRLWWKLFLWNHRNIHRPQLSKLPQSHPASAALNRQCGYSSDTLEPKHGKAWRHVESPSPASSSGEYFAKSFNDKNIDNQRWSRFQKESTSFWAQNQWVAFSTESSSFNRVDEWVRNLEIQQTPQEEDFDHDDIGSTIFPPSPETGRSMARSTTQLVRHPDANLSKEILIANSVVQSLNPASTVAHISGIGIKAIPAISHFSSLRSVNLSSNFIVHITPAFLPKGIHTLNLSRNKISTVEGLKELTRLRVLDLSYNRISRIGQGLSNCTQIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNTLQALNLLGNAIQRNINDDQLRKAVCGLLPKLVYLNKQSINPQRAREILTDSVAKAALGNSNRGSSKRALKKGSQGGPSSSSVHRGSASGVQKSKRSRSQTKHH* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5219 665 MobiDBLite consensus disorder prediction 620 656 - -
Lja1g5219 665 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 5 664 - -
Lja1g5219 665 SMART LRR_typ_2 489 512 IPR003591 -
Lja1g5219 665 SMART LRR_typ_2 445 467 IPR003591 -
Lja1g5219 665 SMART LRR_typ_2 534 556 IPR003591 -
Lja1g5219 665 Pfam Leucine Rich repeat 536 548 IPR001611 GO:0005515
Lja1g5219 665 SUPERFAMILY Outer arm dynein light chain 1 434 601 - -
Lja1g5219 665 Gene3D Ribonuclease Inhibitor 416 506 IPR032675 -
Lja1g5219 665 MobiDBLite consensus disorder prediction 372 392 - -
Lja1g5219 665 Pfam Leucine rich repeat 447 502 IPR001611 GO:0005515
Lja1g5219 665 MobiDBLite consensus disorder prediction 620 665 - -
Lja1g5219 665 SMART LRR_sd22_2 512 533 - -
Lja1g5219 665 SMART LRR_sd22_2 489 511 - -
Lja1g5219 665 SMART LRR_sd22_2 467 488 - -
Lja1g5219 665 SMART LRR_sd22_2 534 555 - -
Lja1g5219 665 ProSiteProfiles Leucine-rich repeat profile. 514 535 IPR001611 GO:0005515
Lja1g5219 665 PANTHER NISCHARIN RELATED 5 664 - -
Lja1g5219 665 ProSiteProfiles Leucine-rich repeat profile. 469 490 IPR001611 GO:0005515
Lja1g5219 665 MobiDBLite consensus disorder prediction 75 94 - -
Lja1g5219 665 Gene3D Ribonuclease Inhibitor 507 607 IPR032675 -
Lja1g5219 665 ProSiteProfiles Leucine-rich repeat profile. 536 557 IPR001611 GO:0005515
Lja1g5219 665 ProSiteProfiles Leucine-rich repeat profile. 491 513 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5219 Lja-Chr1 77825312 77829273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5219 429 573 Receptor kinase-like Gene Family AT4G39400 32.051 1.35e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5219 - - gmx:100810094 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5219 1 77825312 77829273 Lja1g5219 1 77825312 77829273 ECH
Lja1g5970 1 109543406 109545963 Lja1g5219 1 77825312 77829273 PCT