Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5942 ATGGCTCTCTTATCCCATGCCATCACCTTCTTCATCATCTCCTTCCTTTACCTAACTCACCACCAACTCGCCCACGCCCAGTCACCAACTCAGCCACCTTACTCCTGCGGCGCTCACTCCAACTCCTACACCTTCTGCAACTCCAAGCTCCCCATCACTCAAAGAGCCAAGGACCTCGTGTCACGACTCACCCTTGACGAGAAGCTCTCCCAGCTCGTCAACTCAGCGCCACCGATCCCCCGCCTCGGGATCCCGGGCTACCAGTGGTGGAGTGAAGCTCTGCACGGCGTTGCAGACGCTGGCAAGGGCATTAGATTCAATGGCACTATAAAATCAGCAACTAGTTTCCCCCAAGTCATTCTCACCGCGGCTTCATTCGACGCCAATCTCTGGTACCAAATTAGTAAGGTGATTGGAACAGAAGCTAGAGCGGTGTACAATGCGGGGCAAGCTCAGGGGATGACATTTTGGGCTCCAAACATTAACATTTTCAGGGATCCGAGATGGGGGAGAGGGCAAGAAACTGCAGGTGAAGATCCTATGGTGAATGCTAAGTATGCTGTGGCGTATGTTAGAGGGCTTCAAGGGGATTCATTTGAAGGAGGGAAATTAGGGGAGCGTCTTCAAGCTTCAGCTTGCTGCAAACATTTCACTGCTTATGATTTGGATAATTGGAAGGGTTTGGATCGCTTCGACTTCGATGCTCATGTGACTCCGCAAGATTTGGCGGACACCTATCAACCCCCATTTCACAGCTGCATACAACAAGGGCGAGCAAGTGGAATAATGTGTGCTTACAACCGTGTCAATGGGGTTCCAAATTGTGCAGATTTCAATCTCTTAACCAACACCGCAAGAAAACAATGGAATTTCAATGGGTATATTACGTCGGATTGTGGAGCAGTCTCGATCATACACGATAGGCAAGGCTATGCAAAAACAGCAGAGGATGCTGTGGCTGATGTCCTTAGAGCTGGGATGGATGTGGAATGTGGTGATTACTTGACAAAGCATGGTAAATCAGCAGTTTTGCAGAAAAAAGTACCAATATCTCAAATTGACCGTGCCCTTCACAATCTCTTCTCCATTAGAATTAGGCTAGGCCTATTTGATGGAAACCCTTCCAAGCTCACATATGGCTCAATTGGTCCCAACCAAGTCTGCTCCAAACAAAACCTAAAACTAGCACTCGAAGCCGCCAGAAACGGTATTGTCCTTTTAAAAAACACTGCATCAATTCTCCCCCTTCCAAAAACAAACCCAAGCATTGCAGTGATAGGCCCCAATGCCAATGCTTCATCACTAGCTGTTCTAGGAAACTACTATGGCCGTCCTTGTAAACTGGTCACTCTGTTGCAAGGCTTCCAGCACTATGCTAAGGATACCATTTATCACCCTGGTTGTAGTGATGGAACACAGTGTGCTTCTGCTGAAATAAACGAGGCGGTGGAAGTTGCGAAAAAAGTGGATTATGTGGTGCTGGTTATGGGGTTGGATCAAAGTCAAGAGAGGGAATCACATGATCGTGATTTCTTAGAGTTACCAGGGAAGCAACAGGAACTGATTAATAGTGTTGCCAGTGCTTCTAAGAAACCTGTTATTTTGGTCCTCTTGTGTGGAGGTCCTGTGGATATCACTGCAGCTAAGTTTAACAAAAATGTTGGAGGCATATTGTGGGCTGGTTATCCTGGTGAACTTGGAGGAGTGGCACTGGCCCAGGTTATCTTTGGAGACCATAACCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGACTTCATCAGAGTACCAATGACAGACATGAGGATGAGAGCTGATCCAGCATCAGGCTACCCCGGAAGAACCTACCGATTTTACACAGGTCCAAAGGTCTATGAATTTGGCTATGGTCTAAGTTACTCAAAATACTCCTACGAGTTCGTATCCGTCACACAAAACAACCTTCACATCAACCAGTCATCCACTCATTTAACGGTTGATGAAAACTCCGAAACCATCCGTTACAAGCTGGTTTCGGAGCTCGGTGAAGAGACTTGTCAAAGCATGTCTGTCTCGGTGACTTTGGGAGTTAAAAATGATGGAAGCATGGCGGGGAAGCATCCAGTGTTGCTGTTTATGAGGCAGGGGAAACAGAGAAATGGAAACCCTTTAAAACAGTTGGTAGGTTTTCAAAGTGTGAAGCTAGATGCAGGGGAAAGGGGTGAAGTTGGGTTTGAACTTAGCCCCTGTGAGCATCTTAGCATTGCAAATGAGGGAGGTGTAAAGGTGATACAAGAGGGGTCTTATTTATTACATGTTGGGGACAAAGAGTACCCTATGAATATCTCTGTTTGA 2337 0.4681 MALLSHAITFFIISFLYLTHHQLAHAQSPTQPPYSCGAHSNSYTFCNSKLPITQRAKDLVSRLTLDEKLSQLVNSAPPIPRLGIPGYQWWSEALHGVADAGKGIRFNGTIKSATSFPQVILTAASFDANLWYQISKVIGTEARAVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPMVNAKYAVAYVRGLQGDSFEGGKLGERLQASACCKHFTAYDLDNWKGLDRFDFDAHVTPQDLADTYQPPFHSCIQQGRASGIMCAYNRVNGVPNCADFNLLTNTARKQWNFNGYITSDCGAVSIIHDRQGYAKTAEDAVADVLRAGMDVECGDYLTKHGKSAVLQKKVPISQIDRALHNLFSIRIRLGLFDGNPSKLTYGSIGPNQVCSKQNLKLALEAARNGIVLLKNTASILPLPKTNPSIAVIGPNANASSLAVLGNYYGRPCKLVTLLQGFQHYAKDTIYHPGCSDGTQCASAEINEAVEVAKKVDYVVLVMGLDQSQERESHDRDFLELPGKQQELINSVASASKKPVILVLLCGGPVDITAAKFNKNVGGILWAGYPGELGGVALAQVIFGDHNPGGRLPITWYPKDFIRVPMTDMRMRADPASGYPGRTYRFYTGPKVYEFGYGLSYSKYSYEFVSVTQNNLHINQSSTHLTVDENSETIRYKLVSELGEETCQSMSVSVTLGVKNDGSMAGKHPVLLFMRQGKQRNGNPLKQLVGFQSVKLDAGERGEVGFELSPCEHLSIANEGGVKVIQEGSYLLHVGDKEYPMNISV* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5942 778 PANTHER SUGAR HYDROLASE-RELATED 4 777 IPR044993 GO:0009044|GO:0045493
Lja1g5942 778 Pfam Glycosyl hydrolase family 3 C-terminal domain 404 634 IPR002772 GO:0004553|GO:0005975
Lja1g5942 778 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 404 637 IPR036881 GO:0004553|GO:0005975
Lja1g5942 778 Pfam Glycosyl hydrolase family 3 N terminal domain 108 359 IPR001764 GO:0004553|GO:0005975
Lja1g5942 778 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 4 777 - -
Lja1g5942 778 SMART Fn3_like_2 701 771 IPR026891 -
Lja1g5942 778 Gene3D Immunoglobulins 639 776 IPR013783 -
Lja1g5942 778 Gene3D - 55 378 IPR036962 GO:0004553|GO:0005975
Lja1g5942 778 SUPERFAMILY (Trans)glycosidases 43 402 IPR017853 -
Lja1g5942 778 Gene3D - 390 635 IPR036881 GO:0004553|GO:0005975
Lja1g5942 778 Pfam Fibronectin type III-like domain 703 769 IPR026891 -
Lja1g5942 778 PRINTS Glycosyl hydrolase family 3 signature 116 135 IPR001764 GO:0004553|GO:0005975
Lja1g5942 778 PRINTS Glycosyl hydrolase family 3 signature 210 226 IPR001764 GO:0004553|GO:0005975
Lja1g5942 778 PRINTS Glycosyl hydrolase family 3 signature 284 302 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5942 Lja-Chr1 108886637 108892237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5942 23 778 Glycoside Hydrolase AT1G78060 64.220 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5942 - - gmx:100780688 1315.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5942 1 108886637 108892237 Lja1g5942 1 108886637 108892237 ECH
Lja1g5942 1 108886637 108892237 Lja1g5175 1 76070282 76077168 PCT