Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5175 ATGGAATGTCAGTTTCACTTTCACACCATGGTCCTCTCATCACCCTTCACCTTTCTCACGTTCCTCACTCTCACTCTCACCCATGCCCAGTTCACTCATCCACCACCTCCTTTTGCTTGCGATTGGTCCAACCCCTCCACCAGATCCTACCCATTCTGCAACCCAAAGCTTCCCATCAAGCAAAGAACCAGAGACCTTGTCTCACGGCTCACATTGGATGAGAAACTCGCCCAACTTGTTAACTCAGCCCCTCCCATTCCCCGACTCGGCATCCCAGGTTACCAGTGGTGGAGTGAAGCACTTCACGGTGTTGGCAATGTTGGTCGTGGCATCTTCTTCAATGGTTCCATTTCTTCTGCAACTAGCTTCCCTCAAGTCATTCTTACCGCAGCCACCTTCGATTCACACCTCTGGTACAAAATTGGTCAGGCTATTGGAGTTGAAGCAAGAGCAATCTACAATGGTGGACAAGCTATGGGGATGACATTTTGGGCTCCAAATATCAACATTTTCAGGGACCCAAGATGGGGGAGAGGACAAGAGACAGCTGGTGAAGACCCTTTGCTGAGTTCTAAGTATGCAGTTTCCTTTGTCAGAGGGATTCAAGGGGATTCTTTTCAGGGAGGGAAATTGAGGGGCCACCTTCAAGCTTCTGCTTGTTGCAAGCATTTCACTGCCTATGATTTGGACAATTGGAAAGGTGTGAGTCGCTTTGTCTTCGATGCTCAAGTGACTTTACAAGACTTAGCGGACACATATCAGCCACCATTTCAGAGTTGCGTACAGCAAGGACGAGCAAGTGGGATAATGTGTGCTTACAACCGTGTAAATGGTGTTCCGAACTGTGCTGATTACAATCTCCTAACCAAAACCGCCAGAAAACAATGGGATTTCCACGGGTACATTGCGTCAGATTGTGGAGCAGTGGCGATCATACATGATGAGCAAGGGTATGCAAAATCAGCAGAGGATGCTGTAGCTGATGTTATTCGGGCTGGGATGGATTTGGAATGCGGTTCTTATTTAACAGACCATGCTAAATCAGCAGTGGTGCAGAAAAAACTACCCATATCACTAATAGACCGTGCCCTTCACAACCTGTTTTCAATCAGAATAAGGCTTGGCCTATTTGATGGAAATCCAAACAAGCTCTCATTTGGCATGATTGGTCCAAACCATGTCTGTTCCAAACAACACCTCTACCTTGCTCTTGAAGCTGCAAGAAATGGCATTGTCCTTTTAAAAAACACAGCCTCACTTCTCCCATTTCCAAAAACAAGCCCCACCACCATATCCCTAGCAGTGATAGGTCCCAACGCCAACGCTTCCCCGCTAACTCTTCTAGGAAACTATGCTGGCCCTCCTTGTAAATCCATCACAATACTGCAAGGGTTTCAGCATTATGTGAGGGACACAGTTTTTCACCCCGGATGTGATGGTGGACCAAAGTGTCCCTCGGCACAAATAGAGGAGGCTGTGGAGGTTGCTAAGAGAGTGGATTATGTGGTGCTGGTTATGGGGTTGGATCAGAGTGAAGAGAGGGAAGAACGCGATCGTGCTCACCTTGACTTGCCGGGCAAGCAACTGGAACTCATTAATAGTGTTGCCAAAGCTTCTAAGAGACCTGTTGTTTTGGTGCTCCTTTGTGGAGGGCCTGTGGATATTAGTTCAGCAAAGTATGATAACAAAATTGGAGGGATTCTCTGGGCTGGTTATCCAGGAGAACTTGGAGGCATTGCACTTGCACAGGTTATATTTGGTGACCATAACCCAGGAGGAAGATTACCAATTACTTGGTACCCAAAAGACTACATCAAAGTGCCAATGACAGACATGAGGATGCGAGCTGATCCTGCAACCGGCTATCCCGGTAGAACTTACCGATTCTACAAGGGTCCAAAATTGTATGAATTTGGCTACGGACTAAGCTACTCAAAATATTCCTATGAGTTCATTTCTGTTACACACAACAATCTTCACTTCAATCAATCATCCACTCATATGATACTTGAAAATTCTGAAACCACCAAGTACAAATTAGTTTCTGAATTGGGTGAAGAAGCCTGCGAAAGAATGTCGGTCTCGGTCACCGTGGGAGTTCAAAATCATGGAAGCATGGTGGGGAAGCATCCTGTGTTGCTTTTCATGAGGCCAGGAAAACAGAGAACAGGAAGTTTTATCAAACAGTTGGTGGGTTTTCAGAGTGTGTTGCTAGATGCAGGGGAAAGGGGTCAAATTGGATTTGACTTAAGCCCTTGTGAGCATCTTAGTAGAGTGAATGAGGTTGGTTTGAAGGTCATAGAAGAAGGGTCTCACTTTTTGCTTGTGGGTGATGAAGAGTACCCAATTGATATCATAGTTTGA 2364 0.4607 MECQFHFHTMVLSSPFTFLTFLTLTLTHAQFTHPPPPFACDWSNPSTRSYPFCNPKLPIKQRTRDLVSRLTLDEKLAQLVNSAPPIPRLGIPGYQWWSEALHGVGNVGRGIFFNGSISSATSFPQVILTAATFDSHLWYKIGQAIGVEARAIYNGGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPLLSSKYAVSFVRGIQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVSRFVFDAQVTLQDLADTYQPPFQSCVQQGRASGIMCAYNRVNGVPNCADYNLLTKTARKQWDFHGYIASDCGAVAIIHDEQGYAKSAEDAVADVIRAGMDLECGSYLTDHAKSAVVQKKLPISLIDRALHNLFSIRIRLGLFDGNPNKLSFGMIGPNHVCSKQHLYLALEAARNGIVLLKNTASLLPFPKTSPTTISLAVIGPNANASPLTLLGNYAGPPCKSITILQGFQHYVRDTVFHPGCDGGPKCPSAQIEEAVEVAKRVDYVVLVMGLDQSEEREERDRAHLDLPGKQLELINSVAKASKRPVVLVLLCGGPVDISSAKYDNKIGGILWAGYPGELGGIALAQVIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPATGYPGRTYRFYKGPKLYEFGYGLSYSKYSYEFISVTHNNLHFNQSSTHMILENSETTKYKLVSELGEEACERMSVSVTVGVQNHGSMVGKHPVLLFMRPGKQRTGSFIKQLVGFQSVLLDAGERGQIGFDLSPCEHLSRVNEVGLKVIEEGSHFLLVGDEEYPIDIIV* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5175 787 Pfam Glycosyl hydrolase family 3 N terminal domain 117 366 IPR001764 GO:0004553|GO:0005975
Lja1g5175 787 Gene3D - 396 645 IPR036881 GO:0004553|GO:0005975
Lja1g5175 787 SMART Fn3_like_2 710 780 IPR026891 -
Lja1g5175 787 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 411 647 IPR036881 GO:0004553|GO:0005975
Lja1g5175 787 Gene3D Immunoglobulins 673 785 IPR013783 -
Lja1g5175 787 SUPERFAMILY (Trans)glycosidases 50 409 IPR017853 -
Lja1g5175 787 Pfam Fibronectin type III-like domain 712 778 IPR026891 -
Lja1g5175 787 PRINTS Glycosyl hydrolase family 3 signature 217 233 IPR001764 GO:0004553|GO:0005975
Lja1g5175 787 PRINTS Glycosyl hydrolase family 3 signature 123 142 IPR001764 GO:0004553|GO:0005975
Lja1g5175 787 PRINTS Glycosyl hydrolase family 3 signature 291 309 IPR001764 GO:0004553|GO:0005975
Lja1g5175 787 PANTHER SUGAR HYDROLASE-RELATED 16 786 IPR044993 GO:0009044|GO:0045493
Lja1g5175 787 Gene3D - 62 385 IPR036962 GO:0004553|GO:0005975
Lja1g5175 787 Pfam Glycosyl hydrolase family 3 C-terminal domain 411 644 IPR002772 GO:0004553|GO:0005975
Lja1g5175 787 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 16 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5175 Lja-Chr1 76070282 76077168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5175 35 787 Glycoside Hydrolase AT1G78060 64.418 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5175 - - aprc:113867121 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5175 1 76070282 76077168 Lja1g5175 1 76070282 76077168 ECH
Lja1g5942 1 108886637 108892237 Lja1g5175 1 76070282 76077168 PCT