Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5941 ATGAGCATGGATTCAAAGAAATCCGCCTCTAATGGTCATGAGAAAACGTTAATACCGCAAGAACAGCAGGCAAAGATCAATGAGTTGAGAAGGTTAATTGGGCCGCTGTCCGGTAAGGCATCCATCTATTGTTCTGATGCATCCATCTCAAGGTATTTGAGGGCACGGAATTGGAATGTCAAGAAGGCAGCTAAAATGTTGAAGCAAACCTTAAAATGGAGAGCAGAGTACAAACCGGAAGAGATCCGCTGGGAAGATATTGCTCATGAAGCAGAGACAGGAAAGATCTATAGGGCAAATTATATTGACAAGCTTGGGAGAACAGTCCTTGTAATGAGACCTGGCCGCCAGAACTCAAAGTCAACAAAAGGACAAATTAAGTATTTGGTATACTGCATGGAGAATGCTATTTTAAATCTTTCACAAGAACAGGAACAGATGGTCTGGCTGATTGACTTCCAGGGTTTCAATATGTCACATATATCAATCAAAGTGACACGTGAAACTGCCCATGTATTACAAGAACATTATCCCGAACGGCTTGGTCTTGCAATACTGTACAATGCGCCTAAATTCTTCGAACCATTCTTCACGATGGTAAAGCCCCTATTAGAGACCAAGACTTATAATAAAGTCAAGTTCGGTTACTCTGATGATCAGAACACCAAGAAGCTAATGGAGGATTTGTTTGATTTTGACCATCTTGAATCTGCATTTGGTGGGAAAGATACTGCAGAGTTTGAGATAAACAAATATGCTGAGCGAATGAAAGAGGATGACAAGAAGATTCCCTCTTTTTGGGCAAGTGAAAACTCTACATCCTCAGTCCAAAACATTGCTCCTTCTTTAGATTCAATTAAGTTAGACACAGATTCTGATGCTTCAGATAATGAGAAAAAAGTATGTGCATCTGACAGTGAGAAAATTGATTGTTCCCCTAACCCCGATTCGGAAACTGACATCATTGACCATGATGAGAATAATCTAGGGAAAAGAAATGACATCATTGACCATGATGAGAATAATCAAGGGAAAAGAAATGCAAATGAAGATAGCAAGGTGCTATGA 1068 0.3989 MSMDSKKSASNGHEKTLIPQEQQAKINELRRLIGPLSGKASIYCSDASISRYLRARNWNVKKAAKMLKQTLKWRAEYKPEEIRWEDIAHEAETGKIYRANYIDKLGRTVLVMRPGRQNSKSTKGQIKYLVYCMENAILNLSQEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQEHYPERLGLAILYNAPKFFEPFFTMVKPLLETKTYNKVKFGYSDDQNTKKLMEDLFDFDHLESAFGGKDTAEFEINKYAERMKEDDKKIPSFWASENSTSSVQNIAPSLDSIKLDTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHDENNLGKRNDIIDHDENNQGKRNANEDSKVL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5941 355 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5941 355 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Lja1g5941 355 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Lja1g5941 355 PANTHER GH16843P 1 304 - -
Lja1g5941 355 CDD SEC14 92 242 IPR001251 -
Lja1g5941 355 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Lja1g5941 355 SUPERFAMILY CRAL/TRIO N-terminal domain 18 86 IPR036273 -
Lja1g5941 355 SMART sec14_4 90 244 IPR001251 -
Lja1g5941 355 Pfam CRAL/TRIO domain 93 241 IPR001251 -
Lja1g5941 355 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Lja1g5941 355 Gene3D - 2 278 IPR036865 -
Lja1g5941 355 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 304 - -
Lja1g5941 355 MobiDBLite consensus disorder prediction 289 355 - -
Lja1g5941 355 MobiDBLite consensus disorder prediction 286 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5941 Lja-Chr1 108876688 108882434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5941 49 212 Acyl Lipid Metabolism Gene Families AT5G47730 27.222 1.19e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5941 - - gmx:100777106 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5941 1 108876688 108882434 Lja1g5941 1 108876688 108882434 ECH
Lja1g5941 1 108876688 108882434 Lja1g5174 1 76053579 76059938 PCT