Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5174 ATGTCAGTGTCACAAGAACAGAAGGCAAAGATTATTGAGGTGAAGAGTTTGATAGGGCCATTATCAGATAAGGCATCCCTGTATTGTTCTGAAGCAAGTATCTCAAGGTATTTGAGGTCACAGAATTGGAATGTCAAGAAAGCAGCTCAAATGTTGAAACAAAGCCTGAAATGGAGAGAAGAATACAAACCTGATGAGATCCGCTGGGAAGAGGTTTCTGAAGAAGCAGAGACAGGGAAGATGTATAGACCAAATTACTGCGACAAACATGGGAGATCAGTGCTTGTAATCAAACCTAGTCGCCAGAACTCAAAGTCAATAAAACAGCAGGTGAAGCATTTTGTTTACTGCATGGAGAATGCCATTTTAAATCTCCCACCACACCAGGAACAGGTGGTGTGGTTGATTGATTTCCAGGGTTTCAATCTGTCAAATATATCATTCAAGCTGGCACGCGAAACCATCCATGTATTACAAGAATATTATCCAGAGAGGTTGGGGTTGTCGCTAATATACAATGCACCATGGATCTTCCAACCATTCCTCGCGATGGTAAAGCCCCTGCTTCAGCCTGAGAATTATAATAAATTGAAGTTTGGTTATTCTAACGACGAAGGCACAAAGAAGATAATGGAGGATTTGTTTGATATGGATCATCTTGAATCAGCATTTGGTGGGAATAACAACACAGGATTCGACATCTGTAAATATGCTAAGAGAATGGAAGAGGAAGACAGTAAAACACACTCTTTCTGGACACAGGCAAACTCTCTATAA 777 0.4067 MSVSQEQKAKIIEVKSLIGPLSDKASLYCSEASISRYLRSQNWNVKKAAQMLKQSLKWREEYKPDEIRWEEVSEEAETGKMYRPNYCDKHGRSVLVIKPSRQNSKSIKQQVKHFVYCMENAILNLPPHQEQVVWLIDFQGFNLSNISFKLARETIHVLQEYYPERLGLSLIYNAPWIFQPFLAMVKPLLQPENYNKLKFGYSNDEGTKKIMEDLFDMDHLESAFGGNNNTGFDICKYAKRMEEEDSKTHSFWTQANSL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5174 258 SMART sec14_4 75 229 IPR001251 -
Lja1g5174 258 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 257 - -
Lja1g5174 258 CDD SEC14 77 227 IPR001251 -
Lja1g5174 258 SUPERFAMILY CRAL/TRIO N-terminal domain 4 71 IPR036273 -
Lja1g5174 258 Pfam CRAL/TRIO domain 77 226 IPR001251 -
Lja1g5174 258 PANTHER GH16843P 1 257 - -
Lja1g5174 258 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 69 232 IPR001251 -
Lja1g5174 258 Gene3D - 1 257 IPR036865 -
Lja1g5174 258 SUPERFAMILY CRAL/TRIO domain 69 243 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5174 Lja-Chr1 76053579 76059938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5174 33 212 Acyl Lipid Metabolism Gene Families AT5G47730 27.273 7.05e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5174 - - cam:105852179 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5174 1 76053579 76059938 Lja1g5174 1 76053579 76059938 ECH
Lja1g5941 1 108876688 108882434 Lja1g5174 1 76053579 76059938 PCT