Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5932 ATGTTGCTAGGGAAGAGACCTCGTCCTCCAATGAAGAGAACCACAAGCATGTCTGAGATAACCTTGGATCTGAACACCACCACGGTTGTCACCACCGATGTTAGATCCGGTGGCGGCGGCAGTGGTGGGTTCAATAATGGGTTAGATCAGACCAAGGTTTTGGCTCCAGTTCCACCCAGAAACCATAGAAGGCATTCCTCTGATTTCACAGGGACTCCTGATTTCTTGCGCTCTTGCTGTCTCTGCAGACGCCGTCTCGTACCAGGTCGTGACATCTACATGTACAGGGGTGATAGTGCTTTCTGCAGCCTCGAGTGTCGTCAGCAGCAGATGAAGCAAGATGAGAGAAAAGAGAAGCTTTTGGTGGCATCAGCCAAGAAACAAGTTGTGGCGGCTCCAGCTTCATCTGGTTCTCAAGTCACCAACACCGCCAGCAAAGGCGAAACAACAGTGGCTGCTTTGTAA 465 0.5097 MLLGKRPRPPMKRTTSMSEITLDLNTTTVVTTDVRSGGGGSGGFNNGLDQTKVLAPVPPRNHRRHSSDFTGTPDFLRSCCLCRRRLVPGRDIYMYRGDSAFCSLECRQQQMKQDERKEKLLVASAKKQVVAAPASSGSQVTNTASKGETTVAAL* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5932 154 MobiDBLite consensus disorder prediction 132 154 - -
Lja1g5932 154 ProSiteProfiles Zinc finger FLZ-type profile. 74 118 IPR007650 -
Lja1g5932 154 PANTHER - 1 142 - -
Lja1g5932 154 Pfam zinc-finger of the FCS-type, C2-C2 67 117 IPR007650 -
Lja1g5932 154 MobiDBLite consensus disorder prediction 132 149 - -
Lja1g5932 154 PANTHER FCS-LIKE ZINC FINGER 5 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5932 Lja-Chr1 108563198 108564441 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5932 - - var:108331042 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5932 1 108563198 108564441 Lja1g5932 1 108563198 108564441 ECH
Lja1g5932 1 108563198 108564441 Lja1g5171 1 75992226 75994008 PCT