Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5171 ATGATGTTAGGGAAGAGACCTCGTCCTCCGATGAAGAGAACCACCAGCATGTCGGAGATAACCTTCGATCTGAACACGGCGCCGGAAGATGGTGGTGCTACCGGCAACCGGCACGGAGGAGCTGCTGGTTTTAACGGTTCAGATCAGAGCAGGATTTTGGCCACGGTTTCGCCCAGAAATCACAGAACGCATTCTGTGGATTTTGCTCAAACCCCTGATTTCTTGCGTTGTTGCTTCCTCTGTAAACGCCGTTTGGCTCCTGGCCGTGACATCTACATGTACAGGGGTGATAGTGCATTTTGCAGTCTAGAGTGCCGTCAGCAGCAGATGAACCAAGATGAGAGAAAGGATAAGTGTTGTGTGGCATCAAAGAAACAAGTTGTGGCTACTGCTGGGTCTCAAGTCACCAGTACGAAAGGGGAAACTGTGGTTGCCACAAAGTCGTAG 447 0.5078 MMLGKRPRPPMKRTTSMSEITFDLNTAPEDGGATGNRHGGAAGFNGSDQSRILATVSPRNHRTHSVDFAQTPDFLRCCFLCKRRLAPGRDIYMYRGDSAFCSLECRQQQMNQDERKDKCCVASKKQVVATAGSQVTSTKGETVVATKS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5171 148 MobiDBLite consensus disorder prediction 24 47 - -
Lja1g5171 148 PANTHER FCS-LIKE ZINC FINGER 5 1 145 - -
Lja1g5171 148 Pfam zinc-finger of the FCS-type, C2-C2 69 116 IPR007650 -
Lja1g5171 148 PANTHER FCS-LIKE ZINC FINGER 5 1 145 - -
Lja1g5171 148 ProSiteProfiles Zinc finger FLZ-type profile. 73 117 IPR007650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5171 Lja-Chr1 75992226 75994008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5171 - - lja:Lj0g3v0315579.1 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5171 1 75992226 75994008 Lja1g5171 1 75992226 75994008 ECH
Lja1g5932 1 108563198 108564441 Lja1g5171 1 75992226 75994008 PCT