Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5827 ATGGTAGCATGTGTCGACATGGCATTCTCCGACGTCGTTCTGCCACCGTCGTCGTGCCTCTGCTTCTTCAAGCCGCCGCCACCGTCGTCGTCGCAGCTCACCAATGCTAGAATCATGGGCTTCGGCTTCGAGTTTCACAGGAATGGAAGAAGAAAGCTTCGACGAAAACACCTCAAGTTCGTCATCACCGCTCAACTCTCCAACTCGTTTTCCTTGAGCTTCGGTCTCGACTCTCCGAGCTTCAATTCCCTCCAGTCTCATGATCCATCACAGTTATCATGGATGGGTCCAGTTCCAGGTGATATTGCTGAAGTGGAGGCATATTGTAGGATTTTTAGGAATTCTGAAAGGCTTCATTCTGCTTTAATGGATGCGTTATGTAATCCGTTGACCGGTGAATGTAGTGTCTCGTATGAGGTTTCGTCGGAGGAGAAGCCTCAGTTAGAAGATAAAATAGTTTCTGTCCTTGGATGCATGATATCCCTTGTGAACAAAGGGAGAGAGGATGTTCTTTCCGGAAGGTCATTGATTACGAAGCCCTTTCGTGTTGTTGAGGTTAGTACGGCGACTACGATGGAGGATAAGCTCCCTCCGCTTGCTGTTTTTAGGAGGGAAATGAAAAGGTGTTGTGAGAGCTTGCATGTTGCCCTTGAGAATTATTTAGAACCTGGTGACGACCGAAGCTTGAATGTATGGAGGAAACTTCAGAGACTGAAGAATGTCTGCTATGATCCTGGTTTTCCTCGCGGGGAGGGTTGTCCTTGTCATACAGTGTTTGCAAATTGGAGTCCTGTATATTTGTCTAGTTCTAAAGATGAGGCAGAATCCAAAGACTCCGAGGCAGCTTTTTGGACTGGTGGTCAGGTAACAGAAGAAGGCTTAAAGTGGTTACTGGATAAAGGATATAAAACGATCATAGATCTTAGAGCGGAGAATGTCAAAGATCATTTCTATCAACCAGCTTTGCAAGATGCTATTTCGTCTGGAAGAATTGAGTTGGTGAAAATCCCAGTTGAAGTTATGACTGCACCTACAATGGAACAGGTTATGAGGTTTGCATCTTATGTTTCAGATTGCAGCAAAAGGCCTATATATCTTCACAGCAAGGAGGGAGTTTGGAGAACATTTTCCATGGTCTCCCGATGGAGGCAGTACACGACTCGTTCTACATCACAGATTGATTCTAATCCACCAGTTGCTCCCTATAAAATTTATAGAAATGGATCTGGGGAACTGCTGGACTCTTCACTGACTGCAGAGAGATCCTCCCTGGAAAAAGATATCGATTCATCGCAAGACAATGCAGGCTCTGATAGAATCAACACTGAAAACAATTATGATGAAAAAACAGAAGGTAATGCGGCCTTAACTGGAACTACTCCTGATAATGGGAAATTATTAAAAACCACTGCTGCTAATGAGGAAGGATCTTTTCCAAGTTTCTTCAGTGAAATTAACCCTTTAAAAGCTCAAGTTCCTCCTCGTGATATCTTTTCCAAAGCAGAGATGTCCAAATTTATGGGAAGCAGGAAGATCTCATCTCCACAATCAAGGAAATTGCATGTTGGTAGACTACAGAAGGGTGTGATTGTTGACACTGGTGCTAATCCTGTACCGAAAACTGTAAAACCTGAAAGTTCAAATGGGGCAACCCATGTTGATTATCCGTCTGGAGAGTCCCAGATTACAGGTGGTGGCAATTTGAAGTTAGTGAATGGGAGTACGTCTAGTTCTGTTAGGTCAACAGTAAATGCATTTAGTAAAGGAGGATTGCATCATGTGACTAATGGCAATGTCTCCAACATTGCAAACAATGATAATGTGACATCTAGCTCTGAAAGGGTTGAAGATGGCATGGTTAAGGCTGGGTTAGCCTTACATGATGAAGACTTGGGATCTGTTGAAGGAGATATGTGTGCATCTTCAACAGGAGTTGTAAGGGTGCAGTCAAGGAAGAAAGCGGAGATGTTCCTAGTTCGAACAGATGGATTCTCCTGTGCTAGAGAAAAGGTGACTGAATCTTCTTTGGCTTTCTCTCACCCTAGCACCCAGCAACAGATGCTTATGTGGAAGACTACACCAAAGAATGTGTTAGTGTTGAAAAAGCTGGGGGACGAACTAATGGAAGAAGCAAAAATGGTCATTTCTTTTCTATATCACCAAGAGAAAATGAGTGTTCTTGTCGAACCTGATGTTCATGATATACTGGCTAGAATTCCAGGCTTTGGATTTGTTCAGACCTTCTATACTCAAGATACCAGTGATCTACATGAGAAAGTAGATTTTGTGGCATGCTTGGGTGGAGATGGTGTCATACTGCATGCATCAAATCTATTCAGAACTGCTGTTCCCCCTATTGTGTCATTTAACCTTGGTTCCCTTGGTTTTCTGACTTCTCATAATTTTGAGGACTACAAGCAAGACTTACGACAAGTCATCCATGGAAATACTACACGAGATGGTGTCTACATTACTCTTAGAATGCGTCTCCGATGTGAAATTTTTCGTAATGGTAACGCAATGCCAGGGAAGGTATTTCACATCCTCAATGAGGTTGTTGTTGATCGGGGTTCTAATCCATACCTTTCAAAAATTGAATGCTACGAACATGATCGACATATAACGAAAGTACAAGGTGATGGAGTCATTGTGGCCACCCCTACGGGAAGTACTGCCTATTCCACAGCTGCTGGAGGTTCCATGGTCCATCCAAATGTTCCGTGCATACTTTTCACCCCAATCTGTCCACATTCGCTTTCATTCAGACCAGTCATTCTTCCAGATTCTGCTCAACTAGAATTAAAGATTCCAGAAGATGCAAGAAGTAATGCCTGGGTTTCATTTGATGGGAAGAGAAGGCAGAAACTGTCAAGAGGAGACTCTGTCAGAATATGCATGAGTCAGCATCCCCTTGCAACTGTTAACAAGTTTGACCAAACTGGTGATTGGTTCCGCAGCTTGATTCGCTGCCTCAATTGGAATGAGAGACTTGATCAAAAGGCTCTATAA 3009 0.4334 MVACVDMAFSDVVLPPSSCLCFFKPPPPSSSQLTNARIMGFGFEFHRNGRRKLRRKHLKFVITAQLSNSFSLSFGLDSPSFNSLQSHDPSQLSWMGPVPGDIAEVEAYCRIFRNSERLHSALMDALCNPLTGECSVSYEVSSEEKPQLEDKIVSVLGCMISLVNKGREDVLSGRSLITKPFRVVEVSTATTMEDKLPPLAVFRREMKRCCESLHVALENYLEPGDDRSLNVWRKLQRLKNVCYDPGFPRGEGCPCHTVFANWSPVYLSSSKDEAESKDSEAAFWTGGQVTEEGLKWLLDKGYKTIIDLRAENVKDHFYQPALQDAISSGRIELVKIPVEVMTAPTMEQVMRFASYVSDCSKRPIYLHSKEGVWRTFSMVSRWRQYTTRSTSQIDSNPPVAPYKIYRNGSGELLDSSLTAERSSLEKDIDSSQDNAGSDRINTENNYDEKTEGNAALTGTTPDNGKLLKTTAANEEGSFPSFFSEINPLKAQVPPRDIFSKAEMSKFMGSRKISSPQSRKLHVGRLQKGVIVDTGANPVPKTVKPESSNGATHVDYPSGESQITGGGNLKLVNGSTSSSVRSTVNAFSKGGLHHVTNGNVSNIANNDNVTSSSERVEDGMVKAGLALHDEDLGSVEGDMCASSTGVVRVQSRKKAEMFLVRTDGFSCAREKVTESSLAFSHPSTQQQMLMWKTTPKNVLVLKKLGDELMEEAKMVISFLYHQEKMSVLVEPDVHDILARIPGFGFVQTFYTQDTSDLHEKVDFVACLGGDGVILHASNLFRTAVPPIVSFNLGSLGFLTSHNFEDYKQDLRQVIHGNTTRDGVYITLRMRLRCEIFRNGNAMPGKVFHILNEVVVDRGSNPYLSKIECYEHDRHITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCILFTPICPHSLSFRPVILPDSAQLELKIPEDARSNAWVSFDGKRRQKLSRGDSVRICMSQHPLATVNKFDQTGDWFRSLIRCLNWNERLDQKAL* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5827 1002 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 385 IPR029021 -
Lja1g5827 1002 PANTHER NAD KINASE 53 1002 - -
Lja1g5827 1002 MobiDBLite consensus disorder prediction 423 464 - -
Lja1g5827 1002 Pfam ATP-NAD kinase N-terminal domain 728 816 IPR002504 GO:0003951|GO:0006741
Lja1g5827 1002 PANTHER NAD/NADH KINASE FAMILY PROTEIN 53 1002 - -
Lja1g5827 1002 Hamap NAD kinase [nadK]. 695 993 IPR002504 GO:0003951|GO:0006741
Lja1g5827 1002 Pfam ATP-NAD kinase C-terminal domain 849 975 - -
Lja1g5827 1002 Gene3D Protein tyrosine phosphatase superfamily 275 405 IPR029021 -
Lja1g5827 1002 Gene3D - 829 969 IPR017437 GO:0003951|GO:0019674
Lja1g5827 1002 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 698 997 IPR016064 -
Lja1g5827 1002 MobiDBLite consensus disorder prediction 434 464 - -
Lja1g5827 1002 Gene3D - 684 994 IPR017438 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5827 Lja-Chr1 104691654 104697873 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5827 K00858 - gmx:100820030 1540.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5827 1 104691654 104697873 Lja1g5827 1 104691654 104697873 ECH
Lja1g5827 1 104691654 104697873 Lja1g4998 1 70107601 70113525 PCT