Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5809 ATGCTCTTAGCCAATATGTGTCTCCTAACACCCAACGACTTGGAACGGATATTTGAGAAGCTGGACATGAATGGTGATGGGTTATTAAGCCTTGAAGAGCTGAATCACCTGCTAGAGAAGACGGGGTTCAAATTCAGCTTAGAGGAGCTTGAGTCTCTTGTGAGAAAGAAGAGCCTCAACCTCAGTGAGTTCTTGTTCTTTTATGACACCATGTTGAAAAGGGATGATGGTGATGATGACAAGATTGATGATGATGAGGTGGAGAGTGACCTTGTGAAGGCTTTCAATGTGTTTGATTTGGATGGTGATGGGTTCATCACAAGTCAAGATCTGGAGTGTGTCTTGAAGAGGCTTGGCATGTGGAGTGGCAAGGATTGCACAACCATGATTTGCTCCTATGATACTAATTTGGATGGTAGGCTTGATTTCCAAGAATTCAAGAACATGATGATGCTTACCACTTCATGA 468 0.4295 MLLANMCLLTPNDLERIFEKLDMNGDGLLSLEELNHLLEKTGFKFSLEELESLVRKKSLNLSEFLFFYDTMLKRDDGDDDKIDDDEVESDLVKAFNVFDLDGDGFITSQDLECVLKRLGMWSGKDCTTMICSYDTNLDGRLDFQEFKNMMMLTTS* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5809 155 CDD EFh 90 151 IPR002048 GO:0005509
Lja1g5809 155 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Lja1g5809 155 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Lja1g5809 155 SMART efh_1 13 41 IPR002048 GO:0005509
Lja1g5809 155 SMART efh_1 125 153 IPR002048 GO:0005509
Lja1g5809 155 SMART efh_1 90 118 IPR002048 GO:0005509
Lja1g5809 155 SUPERFAMILY EF-hand 12 152 IPR011992 -
Lja1g5809 155 Gene3D - 11 82 - -
Lja1g5809 155 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 6 155 - -
Lja1g5809 155 Pfam EF-hand domain pair 89 150 IPR002048 GO:0005509
Lja1g5809 155 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Lja1g5809 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 155 - -
Lja1g5809 155 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Lja1g5809 155 Gene3D - 83 155 - -
Lja1g5809 155 Pfam EF hand 13 40 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5809 Lja-Chr1 103921989 103922974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5809 7 151 EF-hand Containing Proteins AT1G21550 45.098 1.63e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5809 K13448 - gmx:100779760 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5809 1 103921989 103922974 Lja1g5809 1 103921989 103922974 ECH
Lja1g5809 1 103921989 103922974 Lja1g4984 1 69775241 69776125 PCT