Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4984 ATGTTTAGTTTTGCAAATATGTGTCTCTTATCTCCTAGTGACTTGCAGCGGATTTTTCAGAACCTGGACGTGAATGGTGACGGATTCGTGACCCTTGAGGAGCTAAATTGGCTTCTCCAGAAGACAATTAACATCCCCCAATTCGGGTTGGAAGAGCTCGAATCGATTGTGGAGAAGAATCGCCTCGACTTCAGCGAGTTTTTGTTCTTCTACAACTCCATATCGAAGCAGAACAATGGAGAAAACAGAGGAGGTGATGATGATGACCACGACGATGACGATGACAAAGACGATGAAGTTTTGGAGAGCGATCTTGTGAAGACGTTCAAGGTGTTTGACTTGGATGGAGATGGATTCATCACGAGCCAAGAGCTGGAGTGCGTTTTGAAGAGGCTTGGGTTGTGGAACCAAACGAGTTGCAAGGATTGCAGGAGCATGATTCGGTTCTATGATACCAATTTGGATGGAAGGCTTGATTTCCAGGAATTTAAGAACATGATGCTGCTTACCACTGCCTGA 519 0.4509 MFSFANMCLLSPSDLQRIFQNLDVNGDGFVTLEELNWLLQKTINIPQFGLEELESIVEKNRLDFSEFLFFYNSISKQNNGENRGGDDDDHDDDDDKDDEVLESDLVKTFKVFDLDGDGFITSQELECVLKRLGLWNQTSCKDCRSMIRFYDTNLDGRLDFQEFKNMMLLTTA* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4984 172 ProSitePatterns EF-hand calcium-binding domain. 23 35 IPR018247 -
Lja1g4984 172 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Lja1g4984 172 Gene3D - 90 171 - -
Lja1g4984 172 ProSiteProfiles EF-hand calcium-binding domain profile. 10 45 IPR002048 GO:0005509
Lja1g4984 172 Gene3D - 4 87 - -
Lja1g4984 172 CDD EFh 104 167 IPR002048 GO:0005509
Lja1g4984 172 SUPERFAMILY EF-hand 14 168 IPR011992 -
Lja1g4984 172 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Lja1g4984 172 Pfam EF hand 14 41 IPR002048 GO:0005509
Lja1g4984 172 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 7 170 - -
Lja1g4984 172 SMART efh_1 104 132 IPR002048 GO:0005509
Lja1g4984 172 SMART efh_1 142 170 IPR002048 GO:0005509
Lja1g4984 172 SMART efh_1 14 42 IPR002048 GO:0005509
Lja1g4984 172 ProSiteProfiles EF-hand calcium-binding domain profile. 138 172 IPR002048 GO:0005509
Lja1g4984 172 Pfam EF-hand domain pair 104 167 IPR002048 GO:0005509
Lja1g4984 172 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4984 Lja-Chr1 69775241 69776125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4984 10 168 EF-hand Containing Proteins AT1G21550 41.509 5.81e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4984 K13448 - gmx:100527117 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4984 1 69775241 69776125 Lja1g4984 1 69775241 69776125 ECH
Lja1g5809 1 103921989 103922974 Lja1g4984 1 69775241 69776125 PCT