Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4960 ATGGCTAACAATGCAGCTGCGTTTGTTGAGAGAGCAACCAGTGACGCGCTTACTGGTCCTGACTGGGCAGTCAACATAGAGCTGTGTGATATCATTAATATGGATCCTAGGCAAGCAAAGGATGCATTGAAGATACTTAAGAAGCGTTTGGGCAGCAAAAGTCCCAAAACACAGCTGCTGGCTCTTTTTGTTCTGGAGACCCTTAGTAAAAATTGTGGTGAAAATGTATTTCAGCAGATCATTGAGCGGGATATCTTAAAAGAAATGGTAAAGATTGTGAAGAAGAAGCCGGACTTAAATGTGAGGGAGAAGATACTGATTTTAATTGATACATGGCAAGAAGCGTTTGGAGGCCAAAGTGGAGTTTTTCCTCAATACTATGCAGCATATAATGAACTAAAGTCTGCTGGAGTTGAATTTCCTCCACGAGGAGAGGATAGTGTGCCACTCTTCACGCCTGCTCAAACTCAGCCGATTCTTCATTCTGCTGTAGATTATGAAGATGCTGCTATTCAGGCTTCTCTCCAGTCAGATGCATCTGACCTTAGTTTACTGGAGATAAAAAATGCGGAAGGACTAGCTGATGTATTGACGGAAATGCTTAGCGCCTTGAATCCTAAAGACCCTGAGGGTGTGAAGGACGAAGTGATAGTTGACCTTGTGGACCAGTGTCGTTCTTACCAAAAGCGTGTAATGCTTCTTGTGAATAATACTACGGATGAGGAGCTTTTGAGTCAGGGATTGGCACTAAATGACAGCCTTCAGCGAGTACTCGACCGACATGATGATATCGCAAAAGGAACTGCTAATTCAGGTGCAAGAGAAGCTGATCTGCCTCTTGTAAACGTAAACCATGAAGATGATGAGTCCGAAGATGATTTTGCTCAACTGGCCCCCAGGTCATCTCGAGATACTAATGCACAGAATCGGAAACCAGCCTATGATGAGGCAGAATCGGGGAGGGTAAACTCATTTTCCCCCCCACCACCAGCATCAAGGAAACCAGTCTACTCTGGCACTGGCGCGGTTGACTACCTTAGCGGTGATGCGTACAAGGCAGAGGGATCCCGTGAAAACTCAGAACCAACTTCATTAGCAGTTCCCCTAGATTCGAGCCTCAATCCTACCGCATCACTAATTTTTAACAAACAGCCTGTGTATGATGAACCATCTCCTATGAACAAATCTTCAGAACATCTGCCTCCAGCTCCCTGGGACACACCATCTCCTGTCGTCATTCCACCCCCGCCTTCAAAGCATAATCAGAGACAGCAGTTTTTTGAGCAACATGGTGGATCTCATTCTAGTAATGGATCCAGTTCCTCTAGTGACGGCTTGGTGGGACAAACTCAAAATCTCTCTCTGAATTCGTCCACCCCACCCAAACAACAGAAGCCTGAAGATGCCCTTTTCAAAGATCTTGTTGATTTTGCAAAATCCAAAACCTCTTCATCTTCCAGGCCCAATAGTTCATATTGA 1479 0.451 MANNAAAFVERATSDALTGPDWAVNIELCDIINMDPRQAKDALKILKKRLGSKSPKTQLLALFVLETLSKNCGENVFQQIIERDILKEMVKIVKKKPDLNVREKILILIDTWQEAFGGQSGVFPQYYAAYNELKSAGVEFPPRGEDSVPLFTPAQTQPILHSAVDYEDAAIQASLQSDASDLSLLEIKNAEGLADVLTEMLSALNPKDPEGVKDEVIVDLVDQCRSYQKRVMLLVNNTTDEELLSQGLALNDSLQRVLDRHDDIAKGTANSGAREADLPLVNVNHEDDESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTGAVDYLSGDAYKAEGSRENSEPTSLAVPLDSSLNPTASLIFNKQPVYDEPSPMNKSSEHLPPAPWDTPSPVVIPPPPSKHNQRQQFFEQHGGSHSSNGSSSSSDGLVGQTQNLSLNSSTPPKQQKPEDALFKDLVDFAKSKTSSSSRPNSSY* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4960 492 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Lja1g4960 492 MobiDBLite consensus disorder prediction 403 417 - -
Lja1g4960 492 Gene3D - 176 273 IPR038425 -
Lja1g4960 492 MobiDBLite consensus disorder prediction 478 492 - -
Lja1g4960 492 PIRSF TOM1 1 491 IPR014645 -
Lja1g4960 492 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Lja1g4960 492 PANTHER TOM1-LIKE PROTEIN 4 1 490 - -
Lja1g4960 492 MobiDBLite consensus disorder prediction 382 492 - -
Lja1g4960 492 PANTHER TOM1-LIKE PROTEIN 1 490 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lja1g4960 492 MobiDBLite consensus disorder prediction 418 464 - -
Lja1g4960 492 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Lja1g4960 492 CDD VHS 5 135 - -
Lja1g4960 492 Gene3D - 3 141 IPR008942 -
Lja1g4960 492 MobiDBLite consensus disorder prediction 287 340 - -
Lja1g4960 492 Pfam VHS domain 6 135 IPR002014 GO:0035091|GO:0043130
Lja1g4960 492 SUPERFAMILY GAT-like domain 146 267 - -
Lja1g4960 492 SUPERFAMILY ENTH/VHS domain 3 142 IPR008942 -
Lja1g4960 492 CDD GAT_GGA_like_plant 186 264 - -
Lja1g4960 492 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4960 Lja-Chr1 69128004 69135692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4960 - - gmx:100795713 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4960 1 69128004 69135692 Lja1g4960 1 69128004 69135692 ECH
Lja1g5790 1 103367406 103376809 Lja1g4960 1 69128004 69135692 PCT