Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4953 ATGGCTAGAGTTTGCTGGCCATATTTTGATCCTGAGTATGAGAACTTCAGCAACAAAATCAATCCTCCAAGGGTCTCAGTGGACAATGATAGTTGTCGTGATTGTACGTTGATCAAGGTTGATAGTGTCAACAAACCGGGAATTCTGCTCGAACTGGTTCAAATCTTGACAGATCTTGACTTCATTATTACCAAAGCTTACATATCTTCTGATGGGGGATGGTTTATGGATGTATTTCATGTCACGGACCAGCAAGGAAAAAAGATAACAGATAGCAAAACCATTGACTTCATTGAAAAGGTTCTAGGACCAAAGAGCAAGAGCACAACAGAAGGGGTGAAGAATTGGCCAGGGGAACGAGTCGGAGTGCATTCTGTTGGTGACCACACAGCCATTGAGCTCATCGGCAGAGACCGCCCCGGTCTCTTATCTGAGATCTCAGCTGTCATTGCCAACCTCAACTTCAATGTGCTTGCAGCTGAAGTTTGGACTCATAATAGCCGAATTGCTTGCGTCCTTTATGTCAACGATGTTACAGCACAATCCATGTGTGATCCAAACAGGTTATCACTCATGGAGGAACAGCTCAACAACATCCTACGAGGGTGTGATGAGGATGGTGAGAGTGTTTCAAGGACCAGCTTGTCCATGGGATTCACCCACATGGACAGGCGGCTTCACCAAATGTTGTCAGCGGATCGGGATTATGAGAGTTCTGGAGCAATATCAGGTGTTGATGTTACTCCCTCTTTCAGGCCTAAAATCTCAATAGTAGGTTGTGAGGAGAAAGGGTATTCTGTGGTTAGTGTCAGGTGCAAAGATAGGGCAAAGCTCATGTTTGACATTGTTTGCACTCTTACTGATATGCAGTATGCTGTCTTCCATGCCACAATACTATCAGAGGGCCCTTATGCATCCCAGGAGTACTTTATTCGGCATATGGACGGATGCACGCTTGATACCGAAGGAGAGAAAGAAAGGGTCATCAAATGCATTGAAGCTGCTATTCGAAGAAGAGTAAGCGAGGGAGTGAGCCTTGAGCTATGTGCAAAGGATAGAGTGGGGTTGCTATCCGATGTAACAAGGATTCTCCGAGAGAATGGCCTAACGGTTTGCAGGGCAGGTATATCAACAAGAGGGGAGCAAGCCCTGAATGTGTTCTATGTGAGGGATGCGTCGGGGAAGCCGGTGGATATGAAGACCATGGAAGTGCTTCGAAAAGAAATAGGGAAGACAATGATGGTGGATGTGAAGAGAGTGCCAAGCAATGACAAAGTACCAGAAGAGACAAGAGAATGGGCTAAAACCAGCTTCTTCTTTGGTAAATTGTTGGAAAGGTTCTTGACTTAG 1350 0.4556 MARVCWPYFDPEYENFSNKINPPRVSVDNDSCRDCTLIKVDSVNKPGILLELVQILTDLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKVLGPKSKSTTEGVKNWPGERVGVHSVGDHTAIELIGRDRPGLLSEISAVIANLNFNVLAAEVWTHNSRIACVLYVNDVTAQSMCDPNRLSLMEEQLNNILRGCDEDGESVSRTSLSMGFTHMDRRLHQMLSADRDYESSGAISGVDVTPSFRPKISIVGCEEKGYSVVSVRCKDRAKLMFDIVCTLTDMQYAVFHATILSEGPYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIRRRVSEGVSLELCAKDRVGLLSDVTRILRENGLTVCRAGISTRGEQALNVFYVRDASGKPVDMKTMEVLRKEIGKTMMVDVKRVPSNDKVPEETREWAKTSFFFGKLLERFLT* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4953 449 ProSiteProfiles ACT domain profile. 37 115 IPR002912 -
Lja1g4953 449 Gene3D - 340 423 - -
Lja1g4953 449 Gene3D - 129 201 - -
Lja1g4953 449 SUPERFAMILY ACT-like 126 202 IPR045865 -
Lja1g4953 449 CDD ACT_ACR_3 265 339 - -
Lja1g4953 449 SUPERFAMILY ACT-like 341 411 IPR045865 -
Lja1g4953 449 CDD ACT_ACR_4 343 414 - -
Lja1g4953 449 ProSiteProfiles ACT domain profile. 131 212 IPR002912 -
Lja1g4953 449 ProSiteProfiles ACT domain profile. 345 422 IPR002912 -
Lja1g4953 449 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 4 449 IPR040217 -
Lja1g4953 449 Pfam ACT domain 37 85 IPR002912 -
Lja1g4953 449 Pfam ACT domain 131 199 IPR002912 -
Lja1g4953 449 CDD ACT_ACR_1 35 105 - -
Lja1g4953 449 PANTHER FOUR ACT DOMAIN ACT DOMAIN PROTEIN WHICH PROTEIN 4 449 - -
Lja1g4953 449 SUPERFAMILY ACT-like 32 104 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4953 Lja-Chr1 68897112 68904452 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4953 - - gmx:100789173 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4953 1 68897112 68904452 Lja1g4953 1 68897112 68904452 ECH
Lja1g5783 1 102994421 103002800 Lja1g4953 1 68897112 68904452 PCT