Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4952 ATGGTTGGCAAGGATAACCTGAGGACTGAGGACCTGAACCTGAACTTGTCCTTTGAGAAGCTGATGATGGTTGCTGGGAACAGGAACGGTGGTAAAGGAGGAGGGGATATGGTGAAGGGTGGGGTGATCAATGAATGGAAGGATATTCCTGTGGAGCTTTTGATGCAGATTCTGTCGCTCGTGGATGATCAAACCATGATCCGAGCTTTTGGAGTTTGTCGTGGCTGGAGAGATGCAATTTCCTTTGGCCTCGCCCGGTTATCGCTTTCATGGTGTAGCAAGAACATGAACAACTTGGTCCTGTCTCTTGTTCCCAAGTTCAAAAAATTGGAAACTCTAATCCTTCGTCAAGACAAGGCTCAACTGGAGGATAGTACTGTTGAGACTATTGCAAATTGCTGTAGAGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAACTTACGGATCGTTCGCTGTATGCTATAGCCCATGGTTGTGGTGACCTTATAAAACTAAACATCAGTGGGTGTTCAGCATTTAGCGACAATGCTTTGGCTTACCTTGCTAGTTTCTGCAGAAGATTAAAAGTTCTGAATCTCTGTGGATGTGTTCAAGCTGCATCTGATACTGCATTGCAGGCTGTTGGACAATACTGCAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGATAATGTTTGTGATGTTGGAGTCATGAGTTTAGCATATGGGTGTCCTGATCTTAGATCAATTGACCTGTGTGGCTGCATTCGTATAACAGATGACAGTGTGATTGCTTTGGCAAACAATTGCCCTCACTTGAGGTCTCTTGGATTGTATTACTGTCAAAACATCACAGACAGGGCAATGTACTGCTTGGCACAGAGCAAAGTGAATAACAGGATGTGGGGAAATGTGAAAGGAGCAAATGATGAGGAAGGCCTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCTTTAGCTGTTCAAGCAGTCTGTGACTCATTCCCTTCTCTCCACACATGCCCGGTGAGACACTCACTTATCATGAGTGGCTGTCTCAGTTTGATGTCTGTGCATTGTGCTTGCGCCGGCCATGCGCATCGTGCAATCACCAATTTCCCTCATCCTGCTCACTGA 1128 0.4574 MVGKDNLRTEDLNLNLSFEKLMMVAGNRNGGKGGGDMVKGGVINEWKDIPVELLMQILSLVDDQTMIRAFGVCRGWRDAISFGLARLSLSWCSKNMNNLVLSLVPKFKKLETLILRQDKAQLEDSTVETIANCCRDLQILDLSKSFKLTDRSLYAIAHGCGDLIKLNISGCSAFSDNALAYLASFCRRLKVLNLCGCVQAASDTALQAVGQYCNQLQSLNLGWCDNVCDVGVMSLAYGCPDLRSIDLCGCIRITDDSVIALANNCPHLRSLGLYYCQNITDRAMYCLAQSKVNNRMWGNVKGANDEEGLRTLNISQCTALTPLAVQAVCDSFPSLHTCPVRHSLIMSGCLSLMSVHCACAGHAHRAITNFPHPAH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4952 375 Gene3D Ribonuclease Inhibitor 84 205 IPR032675 -
Lja1g4952 375 Pfam F-box-like 47 80 IPR001810 GO:0005515
Lja1g4952 375 Gene3D - 44 83 - -
Lja1g4952 375 Gene3D Ribonuclease Inhibitor 206 360 IPR032675 -
Lja1g4952 375 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 357 - -
Lja1g4952 375 SMART LRR_CC_2 134 159 IPR006553 -
Lja1g4952 375 SMART LRR_CC_2 213 238 IPR006553 -
Lja1g4952 375 SMART LRR_CC_2 160 185 IPR006553 -
Lja1g4952 375 SMART LRR_CC_2 306 331 IPR006553 -
Lja1g4952 375 SMART LRR_CC_2 239 264 IPR006553 -
Lja1g4952 375 SMART LRR_CC_2 107 133 IPR006553 -
Lja1g4952 375 SMART LRR_CC_2 186 212 IPR006553 -
Lja1g4952 375 SMART LRR_CC_2 265 290 IPR006553 -
Lja1g4952 375 SUPERFAMILY F-box domain 45 82 IPR036047 GO:0005515
Lja1g4952 375 PANTHER UNCHARACTERIZED 1 357 - -
Lja1g4952 375 Pfam Leucine Rich repeat 213 236 IPR001611 GO:0005515
Lja1g4952 375 Pfam Leucine Rich repeat 264 288 IPR001611 GO:0005515
Lja1g4952 375 SUPERFAMILY RNI-like 83 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4952 Lja-Chr1 68848082 68852599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4952 K03875 - gmx:100818928 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4952 1 68848082 68852599 Lja1g4952 1 68848082 68852599 ECH
Lja1g5782 1 102968946 102976609 Lja1g4952 1 68848082 68852599 PCT