Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5680 ATGAGCACTAGAGAAATTGTGGATTTAACTAGTGATGATGAAAGTGAAAAGGCTGGTCCCGTAACTGCTAAATTGGGGACAGATTTTGTTACTGGTACAAAGCAACAAATTGAGACTCATAAAGGCAGACTAGCCAAGCATAAGCCATCTCGAGCTACTAGACAGGATTCTGAAGAAAATAGAAGCTCTAATTGTCCAAGTACAGGCAATAGTAACTCTAGTGTATTGGAGCAGGGACTGTCACCAATTGATGACACAGGCATTTCGTATGCTTCATCCATTTGTGCAGCACCCCTTTGTAGGCAGTTTTGGAAAGCTGGAAACTATGATATTGGGCCTCGTTCTACAGTCACAGTCCAAAATGCAAAAAACTATCTACATGTACACCCCATGTTCCTTCACTCAAATGCAACTTCACATAAGTGGGCATTTGGTGCCATAGCAGAGCTTCTTGATAATGCAGTTGATGAGATCCAAAATGGGGCTACCTTTGTCCTTGTAGATAAAACATCAAATCCAAGGGATGGAAGTCCGGCATTGTTGATTCAAGATGATGGTGGTGGAATGGATCCGGAAGCAATGCGTCGTTGTATGAGTTTTGGATTTTCAGATAAAAAGTCAAAGCAAGCTATTGGACAGTATGGAAATGGCTTCAAGACCAGTACTATGAGGCTTGGTGCAGATGTCATAGTCTTCAGTCGCCATCTGAAAAATGGGAATTTGACTCAAAGCATTGGACTTCTGTCATATACATTTTTGACGCAAACACATCTTGACAGGATAGTGGTACCCATGGTGAATTATGAATTTAATACCTCAACTGAATCCTTGGAAATCTTAAATGGAAAAGAGCATTTTGTGTCTAATTTGTCATTGATGGTGCGGTGGTCCCCATATTCATCAGAAGCAGAACTTCTAAAACAATTTAATGATATTGGATCTCATGGTACTAAAGTTGTTATCTACAATTTATGGTGCAATGATGATGGCAATTTGGAACTAGACTTTGACACAGATCCTGAGGATATTCGTTGTTTGGGCGATATCAAGAAGATTAACACAGTTCCTGCCTGGAAGGAACTAAATGAGCAACACATTGCTCACCGGTTTCGTTTCTCTTTACGTGTATACTTGTCAATATTGTACTTGCGGATACCGGATATTTTCATTACATTACGAGGGAAAGTTGTGAAGCCACATAACATTGCTGATGATCTTAAATATCCTGAATATATATTATATAGACCACAAGTTGGTGGAAATATAGAGGCCACAATTGTAACAACAATTGGATTTCTTAAGGAAGCTCCTCATGTCACTTTCCATGGTTTCAACGTATATCACAAAAATCGGCTGATACTGCCATTTTGGCAGGTTGTAAGCTATATAGACAGTAGGGGTAGAGGAGTTGTTGGTGTCCTGCAAGCAGACTTTGTTGAGCCAACTCATAATAAACAAGATTTTGAGAGAACTTCCCTGTTTCAAAAGCTTGAAGCCCGATTGAAGGAAATGACATGGGAATACTGGGACTACCATTGTAAACTAATTGGGTATCAGGAAAAGAAGAAGCTTCCAACTTCAGTTAACTCACCGCATTTGTCACTGCAGAAACCGCCTGGTATAGAAAAACCCGTCATATTGAACAAAAGCTCCTCCCCTGTTGTCAATACAAATATAGCATATTGGCATTCCAAACAACATTCATTAAACCCGCAAAGCAGATTTGAGCCAGGATCTCATAATAAGAGGAAGTCACATGAAATGATAGACCTTCAGAAGATGAAAAAACATTCAAGGGAAGACATACCAGGTGTAGGTTTCAGTCAGAATAAACAGAGCAATACAACTCCGGCAGACCAGGTGTTCGACGAAGAGACTATAAACTTGATGCAAGAAAACAAGAAACTGCGTGCACAATGTTTGGAATCTAAAAGGACAGGGGAAGAACTGAAACTCAAGGTGACGAAGCTTAGAAATGAAATACAAGGAGCACAACTTGAGTATAATCGGCTTTTGGCTGAACTGCAGACAGGGGAGTAG 2040 0.401 MSTREIVDLTSDDESEKAGPVTAKLGTDFVTGTKQQIETHKGRLAKHKPSRATRQDSEENRSSNCPSTGNSNSSVLEQGLSPIDDTGISYASSICAAPLCRQFWKAGNYDIGPRSTVTVQNAKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAVDEIQNGATFVLVDKTSNPRDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKQAIGQYGNGFKTSTMRLGADVIVFSRHLKNGNLTQSIGLLSYTFLTQTHLDRIVVPMVNYEFNTSTESLEILNGKEHFVSNLSLMVRWSPYSSEAELLKQFNDIGSHGTKVVIYNLWCNDDGNLELDFDTDPEDIRCLGDIKKINTVPAWKELNEQHIAHRFRFSLRVYLSILYLRIPDIFITLRGKVVKPHNIADDLKYPEYILYRPQVGGNIEATIVTTIGFLKEAPHVTFHGFNVYHKNRLILPFWQVVSYIDSRGRGVVGVLQADFVEPTHNKQDFERTSLFQKLEARLKEMTWEYWDYHCKLIGYQEKKKLPTSVNSPHLSLQKPPGIEKPVILNKSSSPVVNTNIAYWHSKQHSLNPQSRFEPGSHNKRKSHEMIDLQKMKKHSREDIPGVGFSQNKQSNTTPADQVFDEETINLMQENKKLRAQCLESKRTGEELKLKVTKLRNEIQGAQLEYNRLLAELQTGE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5680 679 Pfam Morc6 ribosomal protein S5 domain 2-like 372 509 IPR041006 -
Lja1g5680 679 MobiDBLite consensus disorder prediction 1 19 - -
Lja1g5680 679 MobiDBLite consensus disorder prediction 1 78 - -
Lja1g5680 679 Coils Coil 647 674 - -
Lja1g5680 679 MobiDBLite consensus disorder prediction 39 58 - -
Lja1g5680 679 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 143 347 IPR036890 -
Lja1g5680 679 MobiDBLite consensus disorder prediction 59 78 - -
Lja1g5680 679 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 677 IPR045261 GO:0016887
Lja1g5680 679 PANTHER HISTIDINE KINASE-, DNA GYRASE B-, AND HSP90-LIKE ATPASE FAMILY PROTEIN 1 677 - -
Lja1g5680 679 Gene3D - 131 328 IPR036890 -
Lja1g5680 679 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 145 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5680 Lja-Chr1 100330298 100343322 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5680 - - gmx:100795667 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5680 1 100330298 100343322 Lja4g2296 4 25328629 25338808 ECH
Lja1g5680 1 100330298 100343322 Lja1g5680 1 100330298 100343322 ECH