Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5660 ATGAAACCAATAACCTTCCCTCAAAACACGTTCCCTGAGGTGTGGGAACATGATGATGACGACAACTCCGTCGTTTCCGATTGCGAAAGCGTCGTCGTTTCAAGCACCACCAAAACGACGCAGGCTTCCGAGTCGTCGTTTTTAGTTAAACTCGGAGAGACCGACGTCGTGCAAGACCTCATAAAGCGAAGGTTCGTTCGAGGCTTGGGTTTGCTCGGTGCAAAAACTGAGGTCGTTGCGATTCATCGAAACGCGTGCTCCGGCGTCGTTTCGCAAGCGAGGCTTCAGTGCTTCCATGTTCATGCTAAGGCGGTGGCGGAGCTTCGCGGCGGCGAGGCCAATGTGAAGTATGCTTGGTATGGAGCTCGTGGTGGCGAGAATGAGATTCGAGATGTGCTTTCTCATGGTTTTGGTCATAAACATGGTCCTTCACTCTGCCTCTCTCCAGATGATTCTCCTCTTCAAAGTGTGAAAAACTGTGTAGTTGGCAAGGATGGTGTGAGGCACATGTTACTGTGCCGTGTTATTCTAGGGAGATCGGAGCTTGTGCATGATGGCAGTCAGCAATGCTACCCGAGTTCTGAGGAGTATGATTCTGGGGTGGATAGTTTCTCAGCTCCTAACAAGTACATTATTTGGAGTAACCGGATGAACACGCACGTCTTGCCTGCATATGTTATAAGCTTTCGAGTTCCTTCCGTTAAAGAGATTGTGAAGACTGAAGAAGAACCTTTAAGACCGTCTTCGCCTTGGATGCCGTTTCCAACTCTGATCTCTGCTCTTTCCAAGGTTTTGCCTCAACCTGATATTGCCCTGTTATCCAGGTTGCACAAAGCTAAACAAGAAAGGAAGATTTCACGGCAAGAACTGATTCAGAAAGTGAGACAAATAGCAGGAGACAAGTTGCTGACTGCAGTCATCAAGTCTTACAGAGCCAAGAAAAAACCCTGTAAATTCTCTGCATACAAGGTGAAGGAATGA 981 0.4791 MKPITFPQNTFPEVWEHDDDDNSVVSDCESVVVSSTTKTTQASESSFLVKLGETDVVQDLIKRRFVRGLGLLGAKTEVVAIHRNACSGVVSQARLQCFHVHAKAVAELRGGEANVKYAWYGARGGENEIRDVLSHGFGHKHGPSLCLSPDDSPLQSVKNCVVGKDGVRHMLLCRVILGRSELVHDGSQQCYPSSEEYDSGVDSFSAPNKYIIWSNRMNTHVLPAYVISFRVPSVKEIVKTEEEPLRPSSPWMPFPTLISALSKVLPQPDIALLSRLHKAKQERKISRQELIQKVRQIAGDKLLTAVIKSYRAKKKPCKFSAYKVKE* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5660 326 SUPERFAMILY ADP-ribosylation 91 230 - -
Lja1g5660 326 ProSiteProfiles PARP catalytic domain profile. 34 249 IPR012317 GO:0003950
Lja1g5660 326 Gene3D - 47 231 - -
Lja1g5660 326 Pfam RCD1-SRO-TAF4 (RST) plant domain 246 311 IPR022003 -
Lja1g5660 326 ProSiteProfiles RST domain profile. 245 316 IPR022003 -
Lja1g5660 326 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 17 318 IPR044964 -
Lja1g5660 326 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4 17 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5660 Lja-Chr1 99712273 99715657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5660 - - lja:Lj0g3v0324769.1 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2273 4 25029313 25034978 Lja1g5660 1 99712273 99715657 PCT