Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5416 ATGAGTAGGGTCATGGCAAGAAGCTCTCAGGACATGTCTAAGAGGCACTATCACTGGTCAAGCAAGGTTGGAACTGAAGATGGTGAAGTGCCCACATCAGAATCACTCTCTACACAGGTGAAGAAAAAAGATGAAGACAAGGTTGCTTCAGTAGTTCCTGCAGCAACGTCCACTGCACAAGCAACAAGGAGGAAGCTGCAGGCAGTGGCAATCTCCAAGCTTCGCTCTGCTCTCACCCTTGCAACCCCGATGAGTGGTTTGGTTCGTGACATGGCGTCGTCTGGGTTGGTTAGAATTGCTCTAGAATCTCTGAGGTTGCTGGAAGAGCCTCTGTGGAGGACATTCTGCAATGGCAAGAAGTGTGGTTTTGCTGCCACAAGAGAATGTGGGCCTAGGGAGTGGGATATCCTCAAAGCGGTGGAGCCAATTTCAATGGGTGCGGGTGTTCTACCAGGAAATAATAATAATAATAATAATGAGGAAGTGGGTGAAGTCATGTATATGAGGGCTAAATTTGAGAGAATTGTTGGGTCAAGAGATTCTGAAGCTTTCTACATGATGAATCCTGATACCAATGGTGCTCCTGAGCTCAGCATTTATTTGCTTAGGGTCTAG 615 0.4699 MSRVMARSSQDMSKRHYHWSSKVGTEDGEVPTSESLSTQVKKKDEDKVASVVPAATSTAQATRRKLQAVAISKLRSALTLATPMSGLVRDMASSGLVRIALESLRLLEEPLWRTFCNGKKCGFAATRECGPREWDILKAVEPISMGAGVLPGNNNNNNNEEVGEVMYMRAKFERIVGSRDSEAFYMMNPDTNGAPELSIYLLRV* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5416 204 MobiDBLite consensus disorder prediction 1 56 - -
Lja1g5416 204 MobiDBLite consensus disorder prediction 9 23 - -
Lja1g5416 204 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 74 204 IPR006460 GO:0010274
Lja1g5416 204 PANTHER PROTEIN MIZU-KUSSEI 1 5 80 IPR006460 GO:0010274
Lja1g5416 204 Pfam Protein of unknown function, DUF617 78 203 IPR006460 GO:0010274
Lja1g5416 204 PANTHER DUF617 FAMILY PROTEIN 79 204 - -
Lja1g5416 204 PANTHER PROTEIN MIZU-KUSSEI 1 79 204 IPR006460 GO:0010274
Lja1g5416 204 PANTHER DUF617 FAMILY PROTEIN 5 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5416 Lja-Chr1 91396438 91397238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5416 - - gsj:114416669 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5416 1 91396438 91397238 Lja4g2023 4 20990406 20991784 ECH
Lja1g5416 1 91396438 91397238 Lja1g5416 1 91396438 91397238 ECH