Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5257 ATGGCACCAACTGTACCTATAGAGTTTGCTGGACAAAAGGAATCTAGAAAGTACTCTCATTCACAAATCATGGGCAAATCTCGAAAATACTCTAAGGGTTATGCTGCTAGATTTGTTCCCGATTTCCGTCATGCTGTGGAGACTATGGGTGAGTCAGAAGGGTTGGGTAGCTCGGGAAGGGTTGATACAGAGCTGACTGCATCTGCAGATTCTTATGCACCGAAGAGGAAATCCCTTGGTTTGAATGGTGCTGATTATGGTAGTTTTGATGTACCGTATCATATTTTCTCATTATCGAAGATGTCAGGTTTCGAGAGAAAGAATTTGAAATTGAGGTTAACTTGGGAACTTGAACAAGTAAGGGAAATTCTGAGGAAAGTTGACAGTGTGAACTCAAACATTGTTGGATTATCTCCCTCTAGTGATGTAAGGAGCTGCAGTGCTGGACAGAAGAGGCCTCAGCTGGAGAGCCAACACACAGCACTGCAAGCCTCAGTGGCACATGGTAAGAAAAGGCCATTGCCAGGACGTACTGGTCCCAAGACAAAAAGAATTATGTCTGGGTGTTTTGAATATAGGAAACCTGCTGCACCAGTGACTTCATATGCTACATTGATGAAACCGTGTGAGACATTACTTAACCGCTTGATGTCTCATCAATTTGCTTGGGTTTTTAACACACCCGTCGATGTTGTTAAATTGAACATTCCAGATTATTTCAATGTCATCAAGCATCCAATGGATTTGGGTACAGTGAAAAGTAGATTATCTTCTGGTGAATATTCAAATCCTGTGAATTTTGCTTCTGATGTGCGGCTGACTTTCTCAAATGCAATGACTTATAATCCACCAGGAAATGATGTGCACATCATGGCAGAGAACCTTAGTAAATTTTTCGAAACGAGATGGAAGTCTATAGAGAAGAAAATTCCTGTCATTGATTGTACTCAATCTGAACCTTCTAGACCTGCTCGTGACGATACTGAAATTCGTGACCAAATTCCTCCCTCCAAAAAGAAGAAAATAACACCAAATGACTCTAATGTCAAGCCAGAGCCTGTTAAAAGAATCATGACTGATGAGGAGAAACATAATTTGAGTCTTGAGTTGGAAGCGATGCTTGGAGAGCTGCCCGAAACCATTATTGATTTTTTGAAAGAGCAAAGTAATGATGCAGGGCAAACCGATGCTGATGAAATTGAGATTGATATTGATGTTCTCAATGATGAAACCTTATTCAAACTGCGGAAGCTTCTTGATGATTATATACAGGAGAAGCAAAGATTCCAGGTGAAAGCTGGAGAGTGTGAAGTGGAGCTTCTTAATGAATCTGGGTTCAGCAATTCATCAATGCAACAATGTAAAGGCAACGAACAAGTTGAGGAGGATGTGGACATTGTTGGTGGGAATGATCCTCCTATTTCAAACTACCCTCTACTAGAGATTGAGAAAGATGGCACCAATAGGAACAATAAATGCAGTAGTTCAAGCAGCTCCAGTAGTGAATCTGGCTCAACATCCAGTGACTCAGATTCAGGTAGTTCATCTGGTAGTGAGTTAGATACTGTTAAAGCATCAGAACCTCCAAGTGCCACCAAGGAAAACGTAGGTTCTGGATTGACTACTGATCAAAACAGAGGGGATCCTGGTAATTCACAAACTGGTAAAGATTCAACTAATGTGGGTGGCCAAGTTGAGTACAATTCAGAGACTCAGCCAGTTACTCTGGAATCAGAAATCCATCAAGAGGGGGAGAGCGCTGCATCTAAGAGGCAAGTCTCTCCCGAAAAGCTCTACCGTGCAGCTTTATTGAGGAGCCGGTTTGCTGACACCATACTTAAAGCTCGAGAGAAAGCACTTGAAAAGGATGAAAAGCGGGATCCTGAAAAACTCAAGATAGAGCGAGAAGATCTTGAGAGGAGGCAGAAGGAAGAGAAAGCTCGACTTCAGGCAGAGGCAAAGGCTGCAGAAGCAGCTCAGAGGAAAGCAGAAGAAGAAGCTGCAGCTGAAGCCAAAAGGAAGAGGGAACTTGACAGAGAAGCAGCCCGTCAGGCTTTGCAAAAGATGGAGAAAACTGTGGAGATCAATGAGAGTAGTCAGTTTTTAGAAGATCTAGAGATGCTGAGTGCTGTACATGATGATATTACACCAAGTTTCAAAGAGGAGACAAGCCCAGATCATCCTGAAAATGAATTAGGTAGTTTCAAGCTACAGGGAAATCCCTTAGAGCAGCTAGGATTATACATGAAGGTTGATGAGGAGGATGAGGAGGAAGAATTGCCTCCAAGTGTTGCAGGGCCATCAAAGGATGTTGAAGAAGGAGAAATAGATTGA 2334 0.4246 MAPTVPIEFAGQKESRKYSHSQIMGKSRKYSKGYAARFVPDFRHAVETMGESEGLGSSGRVDTELTASADSYAPKRKSLGLNGADYGSFDVPYHIFSLSKMSGFERKNLKLRLTWELEQVREILRKVDSVNSNIVGLSPSSDVRSCSAGQKRPQLESQHTALQASVAHGKKRPLPGRTGPKTKRIMSGCFEYRKPAAPVTSYATLMKPCETLLNRLMSHQFAWVFNTPVDVVKLNIPDYFNVIKHPMDLGTVKSRLSSGEYSNPVNFASDVRLTFSNAMTYNPPGNDVHIMAENLSKFFETRWKSIEKKIPVIDCTQSEPSRPARDDTEIRDQIPPSKKKKITPNDSNVKPEPVKRIMTDEEKHNLSLELEAMLGELPETIIDFLKEQSNDAGQTDADEIEIDIDVLNDETLFKLRKLLDDYIQEKQRFQVKAGECEVELLNESGFSNSSMQQCKGNEQVEEDVDIVGGNDPPISNYPLLEIEKDGTNRNNKCSSSSSSSSESGSTSSDSDSGSSSGSELDTVKASEPPSATKENVGSGLTTDQNRGDPGNSQTGKDSTNVGGQVEYNSETQPVTLESEIHQEGESAASKRQVSPEKLYRAALLRSRFADTILKAREKALEKDEKRDPEKLKIEREDLERRQKEEKARLQAEAKAAEAAQRKAEEEAAAEAKRKRELDREAARQALQKMEKTVEINESSQFLEDLEMLSAVHDDITPSFKEETSPDHPENELGSFKLQGNPLEQLGLYMKVDEEDEEEELPPSVAGPSKDVEEGEID* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5257 777 Gene3D - 352 430 IPR038336 -
Lja1g5257 777 PANTHER TRANSCRIPTION FACTOR GTE8 25 762 - -
Lja1g5257 777 SMART bromo_6 198 308 IPR001487 GO:0005515
Lja1g5257 777 Gene3D - 183 317 IPR036427 GO:0005515
Lja1g5257 777 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Lja1g5257 777 PANTHER TRANSCRIPTION FACTOR GTE10 25 762 - -
Lja1g5257 777 MobiDBLite consensus disorder prediction 464 595 - -
Lja1g5257 777 MobiDBLite consensus disorder prediction 489 579 - -
Lja1g5257 777 MobiDBLite consensus disorder prediction 714 729 - -
Lja1g5257 777 MobiDBLite consensus disorder prediction 619 683 - -
Lja1g5257 777 MobiDBLite consensus disorder prediction 316 352 - -
Lja1g5257 777 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Lja1g5257 777 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Lja1g5257 777 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515
Lja1g5257 777 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Lja1g5257 777 ProSiteProfiles NET domain profile. 348 430 IPR027353 -
Lja1g5257 777 SUPERFAMILY Bromodomain 197 308 IPR036427 GO:0005515
Lja1g5257 777 Coils Coil 635 692 - -
Lja1g5257 777 Pfam Bromodomain 209 293 IPR001487 GO:0005515
Lja1g5257 777 Pfam Bromodomain extra-terminal - transcription regulation 358 420 IPR027353 -
Lja1g5257 777 MobiDBLite consensus disorder prediction 714 777 - -
Lja1g5257 777 MobiDBLite consensus disorder prediction 320 346 - -
Lja1g5257 777 CDD Bromo_plant1 205 303 IPR037377 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5257 Lja-Chr1 79441504 79447437 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5257 - - gmx:100776368 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5257 1 79441504 79447437 Lja4g2383 4 26663766 26671666 ECH
Lja1g5257 1 79441504 79447437 Lja1g5257 1 79441504 79447437 ECH