Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5228 ATGGCGGTGCCCACTTCAAACTCTCTCATTCCGACCAAGTCCTTGCTCCCTACCAATTCCCTTATCTATTCCTCCAACAACCTCAGCCAATGCTCCTTTCCTGGCAAGCCCGGGCTCATGCCCAAGACCAGGCCCATTTCAGCCGTCGACAACTCTGCTGTCTCCACCAAGAAACAACAACCAGCCACCGCGACAACCACCACCCGTGAGGCGGCGAAATGGACAGTTGAGAGCTGGAAATCGAAGAAGGCGCTTCAGCTGCCAGAGTATCCTAGCCAAGAGAGCCTGGACACGGTGCTGAAGACGCTTGAAGCTTTCCCTCCGATCGTGTTCGCCGGAGAGGCAAGGAACCTGGAGGAGCGACTGGGGGATGCTGCACTTGGAAAGGCTTTCCTTCTGCAAGGTGGAGATTGTGCTGAGAGCTTTAAGGAGTTCAATGCCACCAACATTCGTGATACCTTCAGGGTTATTCTCCAGATGGGTGTTGTCATGATGTTTGGTGGTCAAATGCCTGTCATCAAGGTGGGAAGAATGGCGGGTCAATTTGCCAAACCAAGATCAGACAATTTCGAGGAGAGGGAGGGAGTGAAGCTGCCAAGTTACAGGGGAGACAACATCAATGGAGACGCATTTGAAGAGAAGGAGAGGATTCCTGACCCAGAAAGGATGATCAGAGCTTATTGTCAATCCGCAGCTACTCTCAATCTTCTCAGATCTTTCGCGACCGGAGGGTACGCCGCCATGCAAAGGGTCACCCAATGGAATTTAGACTTCACTCAGCACCGCGAGCAGGGAGACAGGTACATAGAGCTTGCTCACCGAGTTGACGAGGCCCTCGGGTTCATGGGTGCTGCTGGACTCACTGTGGACCATCCTATAATGAAAACAACTGATTTCTGGACTTCACATGAGTGTTTGCTGTTGCCATATGAACAATCACTCACTAGGTTGGACTCAACTTCTGGCCTCTACTATGACTGTTCTGCTCACATGGTTTGGGTTGGGGAACGAACCAGGCAGCTAGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCCTAGGAATTAAGGTGAGTGATAAGATGGACCCAAATGAGCTTGTGAGACTCATTGAGATATTAAATCCCAAAAACAAAGCAGGGAGAATTACTATCATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCAAATCTGATCAGGGCTGTGCGCAGAGCGGGGCAAATTGTGACATGGGTCAGCGATCCTATGCATGGAAACACTATCAAGGCTCCTTGTGGACTCAAAACTCGCCCCTTCGATTCCATTATGAATGAAGTGAAAGCATTCTTCGACGTGCACGAGCAAGAAGGAAGCCACCCAGGTGGAGTTCATCTAGAGATGACGGGTCAGAATGTGACTGAGTGCATTGGAGGGTCGAGGACGGTCACATTTGATGATCTGAGCTCACGTTACCACACACACTGTGACCCAAGGCTCAATGCTTCACAATCTCTTGAGCTTGCTTTCATCATCGCTGAACGGCTCAGAAAGAGAAGGATCGGATCAGAGCAGTCCCTTTCCTCTCTAGGACTGTGA 1590 0.5044 MAVPTSNSLIPTKSLLPTNSLIYSSNNLSQCSFPGKPGLMPKTRPISAVDNSAVSTKKQQPATATTTTREAAKWTVESWKSKKALQLPEYPSQESLDTVLKTLEAFPPIVFAGEARNLEERLGDAALGKAFLLQGGDCAESFKEFNATNIRDTFRVILQMGVVMMFGGQMPVIKVGRMAGQFAKPRSDNFEEREGVKLPSYRGDNINGDAFEEKERIPDPERMIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFTQHREQGDRYIELAHRVDEALGFMGAAGLTVDHPIMKTTDFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVRLIEILNPKNKAGRITIITRMGAENMRVKLPNLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIMNEVKAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIGSEQSLSSLGL* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5228 529 Gene3D Aldolase class I 107 515 IPR013785 -
Lja1g5228 529 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 41 525 - -
Lja1g5228 529 SUPERFAMILY Aldolase 62 514 - -
Lja1g5228 529 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 41 525 IPR002480 GO:0003849|GO:0009073
Lja1g5228 529 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 74 517 IPR002480 GO:0003849|GO:0009073
Lja1g5228 529 Pfam Class-II DAHP synthetase family 74 510 IPR002480 GO:0003849|GO:0009073
Lja1g5228 529 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5228 Lja-Chr1 78245907 78249053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5228 K01626 - gmx:100797019 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5228 1 78245907 78249053 Lja1g5228 1 78245907 78249053 ECH
Lja1g5981 1 110238615 110242750 Lja1g5228 1 78245907 78249053 PCT