Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4790 ATGGGGGAGCTGATTGGACCTCGCTTGTACAGCTGCTGTAATTGCAGAAACCATGTCTCTCTCCATGATGATATCATTTCCAAGGCTTTTCAGGGAAAAAATGGCCGAGCTTTTCTGTTTTCCCATGCTATGAATGTTGTGACAGGGCCAAAAGAAGACAGGCATCTCTTGACTGGCCTACACACTGTTGCTGATGTTTATTGCGGTGATTGCCGAGAAGTGCTGGGTTGGAAGTATGAAAGAGCTTATGAAGCATCCCAGAAATACAAGGAAGGAAAATTCATTCTTGAGAAATCAAAAATTGTTAAGGAGAACTGGTAG 321 0.433 MGELIGPRLYSCCNCRNHVSLHDDIISKAFQGKNGRAFLFSHAMNVVTGPKEDRHLLTGLHTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4790 106 PANTHER PROTEIN YIPPEE-LIKE 1 106 - -
Lja1g4790 106 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 10 102 IPR004910 -
Lja1g4790 106 ProSiteProfiles Yippee domain profile. 8 105 IPR034751 -
Lja1g4790 106 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4790 Lja-Chr1 64848088 64850520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4790 - - gmx:100800980 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1736 3 19407004 19409064 Lja1g4790 1 64848088 64850520 ECH
Lja1g4790 1 64848088 64850520 Lja1g4790 1 64848088 64850520 ECH