Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4462 ATGAAGCTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACATTCTTCACCTTTGCCTTGGCTAGCAATGTCTCCTATGATGGTCGCTCCCTCATCATTGATGGCCAACGCAAGCTTCTTATCTCTGCTTCCATTCATTACCCACGAAGTGTTCCTGCGATGTGGCCTGGTCTTGTTCAAACAGCCAAGGAAGGAGGCGCGGATGTGATCGAAACCTATGTTTTCTGGAATGGCCATGAACTTTCTCCTGGCAATTATTACTTTGGAGGAAGGTTTGATCTGGTCAAGTTTGCCAAGATTGTTCAGGAGGCTAAGATGTACTTGATTCTTCGAATTGGCCCATTTGTTGCTGCAGAATGGAATTATGGTGGTGTACCAGTGTGGCTGCATTATGTTCCAGGCACTGTCTTTCGGACTTACAATAAGCCTTTTATGTATCATATGCAGAAATTTACAACATACATAGTGAACCTTATGAAACAAGAGAAGCTTTTCGCCTCACAAGGGGGTCCCATAATCTTATCCCAGATAGAAAACGAATATGGATACTATGAAAAATTTTATGGAGACGATGGTAAGAAATATGCCTTATGGGCTGCAAAAATGGCTGTGTCTCAAAATATAGGTGTCCCTTGGATAATGTGTCAACAATGGGATGCTCCAGATCCTGTGATTGATACCTGTAACTCATTCTACTGTGATCAATTTACACCTACCTCTCCAAATAGGCCCAAAATGTGGACTGAGAACTGGCCTGGATGGTTTAAAACTTTTGGGGGCAGAGATCCTCACAGGCCGGCAGAAGATGTTGCATTTTCTGTTGCTCGTTTCTTCCAGAAAGGTGGAAGTGTACATAATTACTACATGTATCATGGAGGAACAAATTTTGGGCGTACAGCAGGTGGCCCATTCATCACTACAAGTTATGACTATGATGCCCCAATAGATGAGTATGGGTTACCTAGACTTCCAAAGTGGGGGCATCTGAAGGAACTTCACAGAGCTATCAAGTTATGTGAGCGTGTATTGCTTAATGGTAAATCAGTCAATATCACCCTCAGTCCTTCTGTGGAGGCTGATGTGTATACTGACTCATCTGGAGGCTGTGCTGCATTTATTGCTAATATTGATGATAAAAATGATAAGACAGTGGAGTTTCGCAATGCATCATATCACCTCCCAGCGTGGTCAGTTAGCATCCTTCCTGATTGCAAGAATGTAGTGTTCAATACAGCAAAGGTTACTTCCCAGACGAATACAATTGCGATGATTCCAGAGAATTTGCAGCAATCAAATAAAGGTGTGAAAACTTTGCAATGGGATGTATTGGAGGAGAAGCCGGGAATCTGGGGGAAGGCAGACTTTGTTAAAAATGGCTTTGTTGACCACATAAATACTACCAAAGATACCACTGACTACCTGTGGCATACAACAAGTATAATTGTTGGTGAAAAGGAGGAGTTTTTAAAGAACGGAAGCAAACCAATTCTTCTAATAGAATCCAAGGGTCATGCTCTCCATGCTTTTGTGAATCAGATATATCAAGGAACTGCAACTGGGAACGGTTCACACTCAGCCTTCACTTATAAGAATCCCATCTCTCTCCGGCCAGGGAAGAATGAAATCACTTTATTGAGCTTGACTGTTGGCCTACAGACCGCAGGACCATTTTATGACTTCGTAGGGGCTGGACTAACAAGTGTGAAGATTAAGGGACTCAACAATGAGACACTAGACTTGTCTTCTTATGCCTGGACTTACAAGATTGGGGTACAAGGAGAACATCTAAAGATATACCAGCAAGATGGGTTAAATAGTGTGAAATGGACATCTACTTCTGAACCACCCGTAGGGAAGCCATTGACGTGGTATAAGGCTGTTGTGGATGCTCCACCTGGAGATGAACCAGTTGGACTGGATATGTTGCATATGGGAAAAGGTCTAGCCTGGTTAAATGGAGAAGAAATTGGAAGATATTGGCCGAGGATAAGTGAATTCAAGAATGAAGATTGTGTTGAAAAATGCGACTACAGAGGCAAATTCAACCCTGACAAATGTGACACTGGTTGTGGACAACCTACACAGCAATGGTATCATGTTCCACGATCTTGGTTCAAGCCATCTGGAAATGTTCTTGTAATTTTCGAGGAGAAAGGTGGAGATCCAAGAAAGATTAGTTTTTTGAGACGAAAAGTGTCAGGGTTGTGTTCTCTTGTTGCTGAGGATTACCCCTCTGTTGGACTCCTTGCTGAGGGTGAAGACAAAATGGAGAACAACAAAAACGTTCCTTTTGCCCGTTTAACATGCCCCAGTAACACTCTTATATCTGCTATAAAATTTGCTAGCTTTGGAACACCTTCTGGAACATGTGGATCTTACCTGAAGGGAGATTGCCATGATCCAAATTCTAGCATAGTTGTTGAGAAGGCGTGCCTAAACAAAAATGACTGTGTGATAAAATTAACTGAAGAGAATTTCAAGACCAGTTTATGTCCTGGTTTATCAAGGACACTTGCGGTGGAAGCGGTTTGTAGCTGA 2544 0.4233 MKLCFFFFFFFFFFFTFFTFALASNVSYDGRSLIIDGQRKLLISASIHYPRSVPAMWPGLVQTAKEGGADVIETYVFWNGHELSPGNYYFGGRFDLVKFAKIVQEAKMYLILRIGPFVAAEWNYGGVPVWLHYVPGTVFRTYNKPFMYHMQKFTTYIVNLMKQEKLFASQGGPIILSQIENEYGYYEKFYGDDGKKYALWAAKMAVSQNIGVPWIMCQQWDAPDPVIDTCNSFYCDQFTPTSPNRPKMWTENWPGWFKTFGGRDPHRPAEDVAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLPRLPKWGHLKELHRAIKLCERVLLNGKSVNITLSPSVEADVYTDSSGGCAAFIANIDDKNDKTVEFRNASYHLPAWSVSILPDCKNVVFNTAKVTSQTNTIAMIPENLQQSNKGVKTLQWDVLEEKPGIWGKADFVKNGFVDHINTTKDTTDYLWHTTSIIVGEKEEFLKNGSKPILLIESKGHALHAFVNQIYQGTATGNGSHSAFTYKNPISLRPGKNEITLLSLTVGLQTAGPFYDFVGAGLTSVKIKGLNNETLDLSSYAWTYKIGVQGEHLKIYQQDGLNSVKWTSTSEPPVGKPLTWYKAVVDAPPGDEPVGLDMLHMGKGLAWLNGEEIGRYWPRISEFKNEDCVEKCDYRGKFNPDKCDTGCGQPTQQWYHVPRSWFKPSGNVLVIFEEKGGDPRKISFLRRKVSGLCSLVAEDYPSVGLLAEGEDKMENNKNVPFARLTCPSNTLISAIKFASFGTPSGTCGSYLKGDCHDPNSSIVVEKACLNKNDCVIKLTEENFKTSLCPGLSRTLAVEAVCS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4462 847 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Lja1g4462 847 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
Lja1g4462 847 Gene3D - 573 735 - -
Lja1g4462 847 ProSiteProfiles SUEL-type lectin domain profile. 761 847 IPR000922 GO:0030246
Lja1g4462 847 SUPERFAMILY Galactose-binding domain-like 587 742 IPR008979 -
Lja1g4462 847 Gene3D Glycosidases 21 341 - -
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 PANTHER BETA-GALACTOSIDASE RELATED 17 839 IPR001944 GO:0004553|GO:0005975
Lja1g4462 847 Pfam Glycosyl hydrolases family 35 32 337 IPR031330 -
Lja1g4462 847 SUPERFAMILY Galactose-binding domain-like 400 563 IPR008979 -
Lja1g4462 847 Pfam Beta-sandwich domain in beta galactosidase 345 416 IPR041392 -
Lja1g4462 847 PANTHER BETA-GALACTOSIDASE 10 17 839 - -
Lja1g4462 847 Pfam Galactose binding lectin domain 769 846 IPR000922 GO:0030246
Lja1g4462 847 Gene3D - 759 847 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4462 Lja-Chr1 58019126 58027567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4462 7 735 Glycoside Hydrolase AT5G63810 70.999 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4462 - - gmx:100815037 1595.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4462 1 58019126 58027567 Lja1g4462 1 58019126 58027567 ECH
Lja1g2379 1 27486082 27490196 Lja1g4462 1 58019126 58027567 ECH