Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2379 ATGACGATGACGACTCGCAAAACCAACATCCTCTTTATCACCCTCCTTGTTACCATCATAATTGCATCTTCCATTTATCCTGCTTCTGCTCATGGCAAGAAGAAGAGGCTTGCTCATAATCGCATTAAGAACTTTCAAAATGTCACTTATGATGGCAAGTCTCTCTTCGTCAATGGAAGACGTGAGCTCCTCTTCTCTGGTTCCGTCCATTACACAAGAAGCACCCCAGATATGTGGCCAGTGATTCTTGATAGAGCCAGACACGGAGGCCTGAATGTCATTCAAACTTACGTGTTTTGGAATGGAAACTATGATCTTGTGAAGTTCATCAGGCTTGTTCAAGAGAAAGGAATGTATGTAACCCTCAGGGTTGGACCTTTCATCCAAGCAGAATGGAATCACGGAGGACTTCCATATTGGTTAAGAGAGGTTCCAGACATCATATTCCGCTCTGACAATGAACCTTATAAGCAACACATGCAAGCATTTGTGACAAAGATTGTGCAAATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAACGAGTACAACCATATCCAACTTGCTTATGAAGAGAAGGGAGACAACTATGTCCAGTGGGCTGCAAATATGGCAGTAAAACTGTATGATGGAGTTCCATGGATCATGTGCAAGCAAAAGGATGCCCCTGATCCAGTTATCAATGCATGCAATGGAAGACACTGTGGTGATACATTCTCAGGCCCAAACAAACCATACAAGCCTACCCTATGGACTGAGAACTGGACTGCTCAGTACAGAGTATTTGGAGATCCAGTTTCCATTAGATCTGCAGAAGATATTGCTTTCTCAATTGCTCGCTTTTTCTCTAAGAATGGAAATTTAGTCAACTATTACATGTACCATGGTGGAACAAATTTTGGAAGAACAAGCTCAGCCTTCACAACAACCCGTTATTACGATGAGGCACCTCTTGATGAGTATGGTCTGGAAAAAGAACCAAAATGGAGTCACTTGAGGGACGCTCACAAGGCATTGCTCTTGTGTAGGAGGGCTATACTAGGTGGTAAACCCAGTGTCACAAAGCTCAACCATTTTCATGAGATTAGAATGTTTAAGAAGCCCGGAACTAAAATTTGTGCCGCTTTCATCACTAACAACCACACCAATGAGGCAGCTACCATTAATTTCAGAGGAAGGAACTACTTTTTGCCAGCACATTCCATCAGTGTCCTTCCCGATTGCAAGACTGTAGTCTACAACACTCAAAGCATTGTTTCACAACACAATGCAAGGAAATATGTGAGGTCAGCTGTTGCGAACAATCACAAGTGGGAGGTGTTTTATGAGGCTATTCCATCATCCAAGAAATTGCAAACAAATGAAAAAACTCCTGCAGAGCTTTATAAGTTGCTTAAAGACACCACAGATTATGCATGGTACACCACCAGCTTCGTGTTGAAGAAAGGAGACTTGCCAAAGAGGGGTGGGGCAACCCCAATTCTTCGTATTATGAGTCTCGGACATTCACTCCTTGCATTTGTAAATGGAAAATACGTTGGAACTGCTCATGGTACCCACGAAGAGAAATCCTTTGAATTCGAGAAAGCTGTAAACTTTAAGGTTGGAACCAACCATATATCCATCTTGGCTAGCACAGTTGGACTACCGGACAGTGGAGCCTACATGGAACACAGGTACGCAGGACCCAAGTCCATCAACATCCTTGGCCTCAGACGTGGAGAGCTTGATCTCACTCACAATGGTTGGGCTAACCGGGTTGGTCTCAAGGGTGAGGCCAATGGCATTTTCACTGAGGAGGGATCACAAAAGGTTAAATGGAGTCCACTTGCAGGACCTGGAAGGGCAATCTCCTGGTACAAGGTAAGAAATACTACCTATAAACCAAACCAGTTGACAAATATTGGAAACTTAAGAACTTCCAAGTTGTTTCCTTTTTCTTTTGTATGTTCTGAATTCAATTTTTCACAGACAAGATTTACCACCCCAGAGGGAAGAGGTCCGGTTGCCATCCGTATGACTGGTATGGGGAAGGGAATGATTTGGGTGAATGGTCGTAGCATTGGTCGACACTGGGTCAGCTTCCTCTCTCCTCTTGGACTACCTACCCAGGCAGAGTACCATATCCCAAGAGCTTACCTCAACCCAAAAGACAACTTGCTTGTTATATTGGAGGAGGACCAAGGAACTCCAGAGAAGATTGAGATCATGAATGTTAATAGAGATACAGTGTGCAGTATCATTGAGGAGAGCGATCCCCCCAATGTCAATTCATGGGTGTCTTCCCATGGACAGTTCCGTCCCAGAGTGAGCAATGTTGCAACACAAGCTTCCCTCAGCTGTGGAAGTGGCAAGAAGATTGTGGCGGTGGAGTTTGCAAGCTTTGGTAACCCTTCAGGTTCATGCGGAAAGTTGGTTTTGGGCGACTGTAATGCAGCTGCTACACAGCAGATTGTTGAGCAGCAATGCTTGGGAAAAGGATCTTGCAATGTCGATTTGAACCGTGCAACCTTCATCAAGAATGGCAAGGATGCTTGTCCTGGTTTAGTAAAGAAACTTGCTATCCAAGTCAAGTGCTCATACTAG 2616 0.4434 MTMTTRKTNILFITLLVTIIIASSIYPASAHGKKKRLAHNRIKNFQNVTYDGKSLFVNGRRELLFSGSVHYTRSTPDMWPVILDRARHGGLNVIQTYVFWNGNYDLVKFIRLVQEKGMYVTLRVGPFIQAEWNHGGLPYWLREVPDIIFRSDNEPYKQHMQAFVTKIVQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGDNYVQWAANMAVKLYDGVPWIMCKQKDAPDPVINACNGRHCGDTFSGPNKPYKPTLWTENWTAQYRVFGDPVSIRSAEDIAFSIARFFSKNGNLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEYGLEKEPKWSHLRDAHKALLLCRRAILGGKPSVTKLNHFHEIRMFKKPGTKICAAFITNNHTNEAATINFRGRNYFLPAHSISVLPDCKTVVYNTQSIVSQHNARKYVRSAVANNHKWEVFYEAIPSSKKLQTNEKTPAELYKLLKDTTDYAWYTTSFVLKKGDLPKRGGATPILRIMSLGHSLLAFVNGKYVGTAHGTHEEKSFEFEKAVNFKVGTNHISILASTVGLPDSGAYMEHRYAGPKSINILGLRRGELDLTHNGWANRVGLKGEANGIFTEEGSQKVKWSPLAGPGRAISWYKVRNTTYKPNQLTNIGNLRTSKLFPFSFVCSEFNFSQTRFTTPEGRGPVAIRMTGMGKGMIWVNGRSIGRHWVSFLSPLGLPTQAEYHIPRAYLNPKDNLLVILEEDQGTPEKIEIMNVNRDTVCSIIEESDPPNVNSWVSSHGQFRPRVSNVATQASLSCGSGKKIVAVEFASFGNPSGSCGKLVLGDCNAAATQQIVEQQCLGKGSCNVDLNRATFIKNGKDACPGLVKKLAIQVKCSY* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2379 871 Gene3D Glycosidases 45 351 - -
Lja1g2379 871 Gene3D - 775 871 IPR043159 -
Lja1g2379 871 Pfam Beta-sandwich domain in beta galactosidase 357 427 IPR041392 -
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 58 75 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 260 275 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 179 194 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 316 332 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 688 704 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 297 312 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 661 675 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PRINTS Glycosyl hydrolase family 35 signature 79 97 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 ProSiteProfiles SUEL-type lectin domain profile. 786 870 IPR000922 GO:0030246
Lja1g2379 871 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 17 637 - -
Lja1g2379 871 SUPERFAMILY Galactose-binding domain-like 412 572 IPR008979 -
Lja1g2379 871 Pfam Glycosyl hydrolases family 35 54 348 IPR031330 -
Lja1g2379 871 Gene3D - 625 758 - -
Lja1g2379 871 Pfam Galactose binding lectin domain 789 869 IPR000922 GO:0030246
Lja1g2379 871 Gene3D - 385 572 - -
Lja1g2379 871 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 181 193 IPR019801 GO:0004553|GO:0005975
Lja1g2379 871 SUPERFAMILY (Trans)glycosidases 46 352 IPR017853 -
Lja1g2379 871 SUPERFAMILY Galactose-binding domain-like 590 775 IPR008979 -
Lja1g2379 871 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 655 866 - -
Lja1g2379 871 PANTHER BETA-GALACTOSIDASE RELATED 655 866 IPR001944 GO:0004553|GO:0005975
Lja1g2379 871 PANTHER BETA-GALACTOSIDASE RELATED 17 637 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2379 Lja-Chr1 27486082 27490196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2379 48 869 Glycoside Hydrolase AT2G16730 56.272 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2379 - - gmx:100791456 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2379 1 27486082 27490196 Lja1g2379 1 27486082 27490196 ECH
Lja1g2379 1 27486082 27490196 Lja1g4462 1 58019126 58027567 ECH