Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4379 ATGGCACTGCAAACACCCTCAACCACTCTTCACACTGCAAGGTCCTTAGCCCCTAATGGCAATAATGCTGGCTTGCGACCAGTGTTCAATCCTTTTGCTTTGAAGTCATCTTTCTTCTCTGGTTCTCTCTTGCTTCATCCTAATCAAAACCGTCTGGTTACTTCTCCAGCTCCCAGGATTTCCATGCGTGTGGCTTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAATGAGAGGACCCCCTTTGAGAAGTTACCTGATAAATACTTCTGCCCTGTTTGTGGTGCTCCAAAACGAAGGTTTAGGACCTATGCTCCAGCTGTAACAAAAAATGCAAATTCTACAGATGTTAGAAAGGAAAGAAAAGCAGAACTCCAAAAAGAAGAATCAATTGGGAAGGCACTTCCTATTGCAGTTGCCGTGGGAATTGCAGTGCTTGCAGCAGCATTATACTACTTCTATCTGAACAAGTAG 483 0.441 MALQTPSTTLHTARSLAPNGNNAGLRPVFNPFALKSSFFSGSLLLHPNQNRLVTSPAPRISMRVASKQAYICRDCGYIYNERTPFEKLPDKYFCPVCGAPKRRFRTYAPAVTKNANSTDVRKERKAELQKEESIGKALPIAVAVGIAVLAAALYYFYLNK* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4379 160 CDD rubredoxin 70 104 IPR024935 GO:0005506
Lja1g4379 160 ProSiteProfiles Rubredoxin-like domain profile. 67 107 IPR024934 GO:0005506
Lja1g4379 160 PANTHER RUBREDOXIN-LIKE SUPERFAMILY PROTEIN 1 159 - -
Lja1g4379 160 SUPERFAMILY Rubredoxin-like 67 110 - -
Lja1g4379 160 Gene3D - 67 106 - -
Lja1g4379 160 Pfam Rubredoxin 70 104 IPR024935 GO:0005506
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4379 Lja-Chr1 56679152 56680601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4379 - - gmx:100500575 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4379 1 56679152 56680601 Lja1g4379 1 56679152 56680601 ECH
Lja4g0579 4 4840556 4840975 Lja1g4379 1 56679152 56680601 PCT
Lja4g0507 4 4133586 4135555 Lja1g4379 1 56679152 56680601 PCT