Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4377 ATGAAATTTTGGAAGTGGGGTTTTGTTGGTTTTCTCTGTGCTGCTTTTGCTCTTGCAGTTGGTGCTGTAGAGCTGGGTCGGAATCAACCCACTGAGAGAATTTCAGGTAGTGCTGGTGATGTGTTGGAAGATGATCCGGTGGGAAAGTTAAAGGTTTTTGTTTATGAACTTCCAAGCAAATATAATAAGAAAATTCTTCAAAAGGACCCAAGATGCCTCACTCATATGTTTGCTGCTGAGATCTTCATGCACCGGTTTCTCTTATCTAGCGCTGTCCGAACCCTTAATCCTGAAGAAGCTGATTGGTTTTATACCCCTGTATACACCACCTGTGACTTGACACCAAGTGGCCTCCCTTTACCTTTCAAGTCACCTCGAATGATGAGAAGTGCCATACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTCGGAGCATGCTTCCATTATCAAGAAGAGAAGGCAATTGAAAGAGGAATTCTTCCACTGCTACAGCGTGCTACCTTGGTTCAAACATTTGGACAGAGGAATCATGTGTGTTTGAAAGAGGGTTCAATCACCATTCCTCCATATGCTCCACCACAAAAAATGCATGCGCATCTAATTCCTGACAATACTCCCAGGTCCATCTTTGTTTACTTCCGAGGATTGTTTTACGATGTTGGAAATGACCCTGAAGGTGGTTACTACGCAAGAGGTGCAAGAGCTGCAGTGTGGGAGAACTTTAAGGACAATCCGCTGTTTGACATTTCCACAGAGCATCCAACCACATACTACGAGGACATGCAACGAGCGGTGTTCTGCTTGTGCCCACTCGGTTGGGCTCCTTGGAGCCCGAGATTGGTCGAAGCTGTGGTATTTGGTTGCATCCCTGTTATAATTGCAGATGACATTGTTCTGCCATTTGCTGATGCAATCCCATGGGAAGAGATAGGCGTGTTTGTTGATGAGAAGGATGTCCCTCAGTTAGACACCATACTCACATCTATCCCACCAGAAGTCATCTTGAGGAAACAAAGATTGCTTGCCAACCCTTCCATGAAGCAAGCCATGCTATTCCCTCAACCTGCCCAGCCAGGAGACACTTTCCATCAAGTTTTAAATGGACTCGCGCGAAAATTACCACATGACCGGAGTATATTCTTGAAGTCAGGGGAGAAGGTTTTGAATTGGACTGCTGGTCCTGTGGGTGACCTTAAACCTTGGTAA 1251 0.454 MKFWKWGFVGFLCAAFALAVGAVELGRNQPTERISGSAGDVLEDDPVGKLKVFVYELPSKYNKKILQKDPRCLTHMFAAEIFMHRFLLSSAVRTLNPEEADWFYTPVYTTCDLTPSGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVTPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHAHLIPDNTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDTFHQVLNGLARKLPHDRSIFLKSGEKVLNWTAGPVGDLKPW* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4377 416 PANTHER IRX10L-LIKE PROTEIN, PUTATIVE-RELATED 6 410 - -
Lja1g4377 416 Pfam Exostosin family 49 344 IPR040911 -
Lja1g4377 416 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 6 410 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4377 Lja-Chr1 56566869 56571948 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4377 K20870 - gmx:100797122 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4377 1 56566869 56571948 Lja4g0505 4 4125040 4128163 ECH
Lja1g4377 1 56566869 56571948 Lja1g4377 1 56566869 56571948 ECH
Lja1g4377 1 56566869 56571948 Lja4g0505 4 4125040 4128163 PCT