Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4327 ATGGGGGAGGAAGAAAAGAAACCAGAGGAAACCAAAGTAGAGGAGAAAAAAGAAGCAGAGGAGCCCAAAAAGCCTGAAGAGGAGAAGGAAGAAAAAAAGGAAGAAGAAACCAAAGCTGAACCTTCTCCTCCACCAGAGATTGTGCTCAAAGTGTTCATGCATTGCGAAGGTTGTGCTCGCAAGGTTCGCCGCTCCCTCAAAGGATTCCCAGGGGTTGAAGATGTAATCACGGATTGCAAATCTCACAAGGTGGTAGTTAAAGGTGACAAAGCGGATCCTGTTAAGGTTCTGGAGAGAGTGCAGAGGAAGAGCCACAGGCATGTTGAGCTTCTTTCTCCAATTCCAAAACCTCCAGAGGAGAAAAAAATCCAAGAGGAAGAGGCAAAGCCCGAGCCAGAGAAGAAGAAAGAAGAGCCTCAGGTTGTGACTGTTGTTCTGAGAGTTCATATGCATTGCGAAGCCTGTGCTCAAGAAATGAAGAGACGGATTCAGAGAATGAAGGGAGTGGAATCGGTGGAACCGGATTTGAAGAACTCGCAAGTAATAGTGAAGGGCGTTTATGATCCTACAATGTTGGTTACATACGTGTACAAGCGGTGCGGGAAGCATGCAGTGATCGTGAAGCAAGAACCAGTGAAAGCAGAGGAAGCAAAAGAGGAGAAGAAAGCCGAGGATGGTGAGAAAAAGGAGGAGAAGAAGAGTGAGGGAGAGGGGAAAAAAGAAGAAGAAAAGAGCGATGGTAAAGCAGGGGAGAAGATCGAGGACGCGGCGGCAACGACAACGATAGAAGAGACAGTGGTGGCGGAGGTGAAGAAATATGAATACGACTATAACCCACAAAGCTATGGCATGAACTTGTATGCATACCCTGCGCATGACCACCCTACGTACGACCACCACGCGTACCCACCACCCCAGATGTTCAGCGATGAGAACCCAAATGCTTGCACTGTCATGTGA 960 0.4792 MGEEEKKPEETKVEEKKEAEEPKKPEEEKEEKKEEETKAEPSPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVITDCKSHKVVVKGDKADPVKVLERVQRKSHRHVELLSPIPKPPEEKKIQEEEAKPEPEKKKEEPQVVTVVLRVHMHCEACAQEMKRRIQRMKGVESVEPDLKNSQVIVKGVYDPTMLVTYVYKRCGKHAVIVKQEPVKAEEAKEEKKAEDGEKKEEKKSEGEGKKEEEKSDGKAGEKIEDAAATTTIEETVVAEVKKYEYDYNPQSYGMNLYAYPAHDHPTYDHHAYPPPQMFSDENPNACTVM* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4327 319 MobiDBLite consensus disorder prediction 211 253 - -
Lja1g4327 319 Coils Coil 214 234 - -
Lja1g4327 319 Gene3D - 138 207 - -
Lja1g4327 319 ProSiteProfiles Heavy-metal-associated domain profile. 53 109 IPR006121 GO:0046872
Lja1g4327 319 SUPERFAMILY HMA, heavy metal-associated domain 48 103 IPR036163 GO:0046872
Lja1g4327 319 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 319 IPR044577 GO:0046872
Lja1g4327 319 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 319 - -
Lja1g4327 319 MobiDBLite consensus disorder prediction 1 46 - -
Lja1g4327 319 MobiDBLite consensus disorder prediction 1 41 - -
Lja1g4327 319 MobiDBLite consensus disorder prediction 211 254 - -
Lja1g4327 319 CDD HMA 53 109 IPR006121 GO:0046872
Lja1g4327 319 Pfam Heavy-metal-associated domain 145 189 IPR006121 GO:0046872
Lja1g4327 319 Pfam Heavy-metal-associated domain 49 102 IPR006121 GO:0046872
Lja1g4327 319 CDD HMA 145 204 IPR006121 GO:0046872
Lja1g4327 319 ProSiteProfiles Heavy-metal-associated domain profile. 150 183 IPR006121 GO:0046872
Lja1g4327 319 SUPERFAMILY HMA, heavy metal-associated domain 139 210 IPR036163 GO:0046872
Lja1g4327 319 MobiDBLite consensus disorder prediction 105 138 - -
Lja1g4327 319 Gene3D - 44 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4327 Lja-Chr1 55830201 55832524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4327 - - gmx:100787932 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4327 1 55830201 55832524 Lja4g0463 4 3760582 3762481 ECH
Lja1g4327 1 55830201 55832524 Lja1g4327 1 55830201 55832524 ECH
Lja4g0463 4 3760582 3762481 Lja1g4327 1 55830201 55832524 PCT