Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3888 ATGTCGTCTCTGAAACCATCCTATTCATCGGATAATCTTACGCTTCCGGTATCGGATCCTCCAAACGACGATGACCGAGAGAGGCTTTTGAAGGGTAATGATTCCATCTTCAGAGGTTCCACCAGACGAGAACGAGGAGGGGTCTACGCTGCCATCTCTTACATGTCCTGCGCAGTGCTCTTGGTGATGTTCAATAAAGCGGCGCTTTCATCTTACCATTTCCCATCTGCAAATGTCATCACACTTCTTCAGATGGTATGTTCTTGTTGTTTTCTCTATATATTGAGGTGCTGGAGGATAATTTCTTTCACAGCAGGTGAAGAAGTAACTAAAGCAGATAACTCGAAAAACTTTGTGCCTTTGAAGACTTTGAAGCATACTCTTCCTCTGGCAGGAGCATATTTACTTTATATGCTAGCCACCATGGAGTCTGTTCGTGGAGTAAATGTTCCGATGTATACTACCCTTAGGAGGAGGACCACAGTAGTATTTACAATGCTTATGGAATATATGCTGATGGGGCAGAGGTATACACCTTCTATCATTTTCAGTGTTGGCTTGATTGTCTTTGGTGCATTTATTGCGGGAGTTCGGGACTTGTCGTTTGATGCCTATGGTTATGCCATTGTTTTCCTGTCAAACATCACCACAGCTATATATCTTGCAAGCATTGCCCGTGTTGGCAAAACTAGTGGCCTTAACAGCTTTGGTCTAATGTGGTGCAACGGTATTATATGTGGGCCAATTTTGCTTATTTGGACATTAGTTCGAGGTGACTTGAAGATGACAGTCAATTTTCCTGATCTGCTTTCACCTGGTTTTATGGTTGTTCTGCTCTCCTCCTGCATTCTTGCTTTCTTCCTGAATTACTGTATTTTTCTGAACACAACTCTGAATTCAGCTCTGACGCAGACAATTTGTGGCAATATGAAGGTTTGTCACTTGCTAGTTTTTTTCCTTAAATATATAATGCACATATCGTTCGAGTTTAGAACTGATGATGTATAA 1008 0.4177 MSSLKPSYSSDNLTLPVSDPPNDDDRERLLKGNDSIFRGSTRRERGGVYAAISYMSCAVLLVMFNKAALSSYHFPSANVITLLQMVCSCCFLYILRCWRIISFTAGEEVTKADNSKNFVPLKTLKHTLPLAGAYLLYMLATMESVRGVNVPMYTTLRRRTTVVFTMLMEYMLMGQRYTPSIIFSVGLIVFGAFIAGVRDLSFDAYGYAIVFLSNITTAIYLASIARVGKTSGLNSFGLMWCNGIICGPILLIWTLVRGDLKMTVNFPDLLSPGFMVVLLSSCILAFFLNYCIFLNTTLNSALTQTICGNMKVCHLLVFFLKYIMHISFEFRTDDV* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3888 335 PANTHER SOLUTE CARRIER FAMILY 35 15 312 - -
Lja1g3888 335 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g3888 335 SUPERFAMILY Multidrug resistance efflux transporter EmrE 124 198 - -
Lja1g3888 335 MobiDBLite consensus disorder prediction 1 17 - -
Lja1g3888 335 Pfam Triose-phosphate Transporter family 57 313 IPR004853 -
Lja1g3888 335 PANTHER BNAA08G30680D PROTEIN 15 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3888 Lja-Chr1 49029044 49034131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3888 56 290 Organic Solute Cotransporters AT2G13650 25.207 9.19e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3888 K15281 - gmx:100778544 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3888 1 49029044 49034131 Lja1g3888 1 49029044 49034131 ECH
Lja5g2849 5 56065648 56072504 Lja1g3888 1 49029044 49034131 PCT