Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3851 ATGGGAAGGCTCTCATTTCTGTTGCTGCTCTTATGTACCACATTCAATGTCGCCTACTCCGACAATGACGCAGTGGTGGCAAATGGGAATTTTGAGGCGGGTCCAAAGCCTTCAGAATTGAAAGGCACGGTGGTGACGGGCGGCAGCCACGCGATACCAGGGTGGGAGATCTCCGGCTTCATTGAATACATAAAATCAGGGCAGAAACAGGGTGACATGTTGCTGGCAGTGCCAGAGGGAGCTTATGCAGTGAGGCTTGGCAACGAGGCTTCTATCAAACAAAACATAAAAGTGATCAAGGGAATGTACTATTCCATCACATTTCTGGTGGCACGCACTTGTGCGCAAGAGGAGCGACTCAACGTGTCTGTGGCTCCAGATTGGGTGGTGCTCCCAATGCAAACACTGTATAGCAGCAATGGTTGGGATGCATATGCATGGTCCTTTCTAGCAGAATACCAAGAGGTGGAAATGGTTTTCCATAACCCTGGTGTGGTTGAAGATGCTGCTTGTGGGCCTCTAATTGATTCTATTGCCCTCAAACCTCTTTATCCTCCAAGACCAACTAACAAGAATGTTTTGAAGAATGGTGGTTTTGAAGAAGGACCATATGTGTTCCCAAACACATCATGGGGTGTGCTCATCCCACCCAACATCATAGACCTCGATGAACACTCTCCTCTCCCAGGATGGATAGTGGAGTCCTTGAAAGCAGTGAAATACATTGATTCAGAGCATTTCTATGTTCCACAAGGCAAAAGAGCCGTGGAGCTAGTAGCTGGAAAAGAAAGTGCCATCGCACAAGTCGCCAGAACTGTTCTTGGCAAAACATACATTCTCTCCTTTGCAGTTGGAGACGCTGGAAATTCTTGTGAAGGGTTGATGAGCGTTGAAGCGTTTGCAGGCAAAGATCATGTAACAGTGCGTTATGAGTCTATAGGCAAAGGTGGATTTAAGCGTGCAAGCCTCAAGTTTGTGGCGGTTAGCACCAGTACACGGATCGTGTTCCTTAGCACTTTCTATGCCATGAGAAGTGACGATTTCTCTTCGCTGTGTGGGCCTGTGATTGATGATATCAAATTGCTTAGTCTTCGTAAACTATAG 1104 0.471 MGRLSFLLLLLCTTFNVAYSDNDAVVANGNFEAGPKPSELKGTVVTGGSHAIPGWEISGFIEYIKSGQKQGDMLLAVPEGAYAVRLGNEASIKQNIKVIKGMYYSITFLVARTCAQEERLNVSVAPDWVVLPMQTLYSSNGWDAYAWSFLAEYQEVEMVFHNPGVVEDAACGPLIDSIALKPLYPPRPTNKNVLKNGGFEEGPYVFPNTSWGVLIPPNIIDLDEHSPLPGWIVESLKAVKYIDSEHFYVPQGKRAVELVAGKESAIAQVARTVLGKTYILSFAVGDAGNSCEGLMSVEAFAGKDHVTVRYESIGKGGFKRASLKFVAVSTSTRIVFLSTFYAMRSDDFSSLCGPVIDDIKLLSLRKL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3851 367 PANTHER OS02G0527500 PROTEIN-RELATED 5 366 - -
Lja1g3851 367 Gene3D - 188 362 - -
Lja1g3851 367 PANTHER PLANT/F18G18-200 PROTEIN 5 366 - -
Lja1g3851 367 Pfam Protein of unknown function (DUF642) 193 360 IPR006946 -
Lja1g3851 367 Pfam Protein of unknown function (DUF642) 25 181 IPR006946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3851 Lja-Chr1 48658035 48660403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3851 - - gmx:100801917 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3851 1 48658035 48660403 Lja1g3851 1 48658035 48660403 ECH
Lja1g3851 1 48658035 48660403 Lja5g2832 5 55820940 55827494 ECH