Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3836 ATGTTCATCTTTGAGAAAATGGCCACTCTCTCTGAAGCCTATAGAGAACACCCTCTCAACCTCCATCACATTATCCCTCTGGATTTTTCTTCAGCTCCAAACTTACCAGAATCACACGCATGGTCACTATCTAAAGATGATCATGATGATGATTATCTCTCTAATTCCAATGGATCACCATCCATACCCATCATCGACCTCATGGATCCAAATGCCATGGAACTCATAGGCCATGCATGTGAAAACTGGGGTGCCTTCCAGTTGAAGAATCATGGCATACCCTTGAGTATCATTCAAGAGGTTGAAAATGAGGCAAAGCGCCTCTTCGCTCTCCCTGCTGATCACAAACTGAAGGCGCTGAGATCTTCTGGTGGCGCCACCGGATACGGCAGCGCTAGGATTTCACCATTCTTTCCTAAGTTCATGTGGCATGAAGGGTTCACCATCATGGGTTCTCCATCTGAAGATGTCAAAAAGATATGGCCGAATGACTATGCACGATTTTGTGACTTGATGGAGAATTATCAAAAACAAATGAAGGTCCTAGCGGAGCAACTAACACGCATGATGTTAAACTTCTTGGACATTAGCAACGGAGAAAACAAGTCCCAGTGGGACATTGGTTCATCAAGCAACATGTGTGGAGTTGTTCAACTAAACTTCTACCCACCCTGCCCCGATCCGACCCGAGCCATGGGTCTAGCCCCGCACACCGACACCTCCCTCTTCACCATCCTTCATCAGACCCAAACCGCCACCGGCCTCCAAGTCTTCAACGAAGGAACAAAAGCCTGGGTCCCAGTGCACCCGCATCGTAACCTTCTGGTGGTTAACACAGGTGATCTCTTCCACATCATGTCAAATGCGAGGTTTCGTTGTGCGCTTCACCGTGTCACTACAAACAAGACCGTGCAGCGTTACTCGGTGGCTTATTTCCACTGTCCACCGTCGGATTACGTGGTTTCTCCGCTGGTGGGCGGTGTCAATAACAGTGTTGCTCGATTTCGTGGGGTAACTGTGAAGGAGTATGTTGGGATTAAGAGCAAGAATTTTGGGGAAGCACTGTCTTTGATTAGTACCTCAAACTAA 1089 0.4766 MFIFEKMATLSEAYREHPLNLHHIIPLDFSSAPNLPESHAWSLSKDDHDDDYLSNSNGSPSIPIIDLMDPNAMELIGHACENWGAFQLKNHGIPLSIIQEVENEAKRLFALPADHKLKALRSSGGATGYGSARISPFFPKFMWHEGFTIMGSPSEDVKKIWPNDYARFCDLMENYQKQMKVLAEQLTRMMLNFLDISNGENKSQWDIGSSSNMCGVVQLNFYPPCPDPTRAMGLAPHTDTSLFTILHQTQTATGLQVFNEGTKAWVPVHPHRNLLVVNTGDLFHIMSNARFRCALHRVTTNKTVQRYSVAYFHCPPSDYVVSPLVGGVNNSVARFRGVTVKEYVGIKSKNFGEALSLISTSN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3836 362 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 210 315 IPR005123 -
Lja1g3836 362 Coils Coil 172 192 - -
Lja1g3836 362 Pfam 2OG-Fe(II) oxygenase superfamily 217 315 IPR044861 -
Lja1g3836 362 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 17 354 - -
Lja1g3836 362 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 354 - -
Lja1g3836 362 Gene3D - 27 351 IPR027443 -
Lja1g3836 362 Pfam non-haem dioxygenase in morphine synthesis N-terminal 62 162 IPR026992 -
Lja1g3836 362 SUPERFAMILY Clavaminate synthase-like 22 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3836 Lja-Chr1 48456403 48458690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3836 62 343 Glycosyltransferase AT5G59530 29.333 6.24e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3836 K04124 - gmx:100818754 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3836 1 48456403 48458690 Lja5g2819 5 55534428 55538343 PCT