Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3819 ATGCAAGAGAGAGAAGAAGAAGAGAGTTTGGATTATTCGTACTGCACAAGTTTCAGACATCTACTCATTTATATTGCTGCATTTGGGAGACTTCTCCACAGCACTATCTCTGTGAAGTGGAATCCCAGGTGTTTGTTTGAGACAATGCTGTGGAAGAGGAACATGTCTATCAGGAAGGATCAGAATCAAAGCTCAATCTCCAATGTGGGTCTGTATCCTCAACGCTTGTTGGGTTCTGATTCAGTTAGGAGCCCCACTTCTCCACTGGATGCTAAAGTTATTCCAAATGCTGACAACCCAAGATCATCATCATTAACAACAGCCCAAATGAGGAGCTGGGATTGCAGCAAAGTTGGTCTAAGCATTGTTGAATCTTTGGAGGACAGAGCTAGAAATTGTGGGAAGTTTCTTCTCTCATCACCAGAGAGGAAGAAGATTAGCCTCAGTCCCCAAATGATGGTCAAAAAAATCTGTGTGAATCCTGCTGAGGAAGAAGAATCTAAGTCTTTGCCTAAAGAGACTTCTTGCAAGGTTCCTGAGTCCAAAAGTGAACCTGTTATCCACAACAAGGGTGAATCCAATGTTGTTTTTGAGATTGGAGACACTGCTCAAGAGCTTGGACTATTTGTGAGAAGCAGGTCCTGTCCATTGAATTCCTACAAAACCTTCCCTGGTTTAACCAGTTCCAAAACTGATTCAACCATTGATAGTTTTGGTTTGAAAGATATGAGTTCTTCTCCTCATTTTATTGGAGGAAGCTCAAGCCATGCTTTCCCACCAGCTGCAGAGTTGAACTCAAACACTGCTTCAATGTGCTCCTCAAATGAGTATCTCATGTCTCTATCTCCTAGTGAGATTGAACTCTCTGAGGACTACACATGTGTGATCACACATGGCCCCAATCCCAAAATAACTCACATTTTTGGTGATTGCATCTTGGAGACTAATGCTAAAGTGATTAAAAACTATTTCAAGATTGAAGGGATGGACAAGGGAATGAACATGTTGGGTGGTAACATGATGCCACCGCCACAGGCTCCAAATCAATATTCCTCAAGTGAGTACTTCCTGAACTTCTGCCACCACTGCAACAAGAAGCTGGACAAGAAAGAAGATATTTACATTTATGGGGGTGACAAAGCATTTTGCAGTTTAGAATGCAGAGAAGTTGAGATCAAGTTTAATGAGGAGCTTGAGAAATCAAAAACTGAATCTGAAAACTCTCCAAAGGCAGAATTTGGAGTGAACCTTTTTGAACCAACCATGTAG 1269 0.4169 MQEREEEESLDYSYCTSFRHLLIYIAAFGRLLHSTISVKWNPRCLFETMLWKRNMSIRKDQNQSSISNVGLYPQRLLGSDSVRSPTSPLDAKVIPNADNPRSSSLTTAQMRSWDCSKVGLSIVESLEDRARNCGKFLLSSPERKKISLSPQMMVKKICVNPAEEEESKSLPKETSCKVPESKSEPVIHNKGESNVVFEIGDTAQELGLFVRSRSCPLNSYKTFPGLTSSKTDSTIDSFGLKDMSSSPHFIGGSSSHAFPPAAELNSNTASMCSSNEYLMSLSPSEIELSEDYTCVITHGPNPKITHIFGDCILETNAKVIKNYFKIEGMDKGMNMLGGNMMPPPQAPNQYSSSEYFLNFCHHCNKKLDKKEDIYIYGGDKAFCSLECREVEIKFNEELEKSKTESENSPKAEFGVNLFEPTM* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3819 422 MobiDBLite consensus disorder prediction 163 185 - -
Lja1g3819 422 ProSiteProfiles Zinc finger FLZ-type profile. 355 399 IPR007650 -
Lja1g3819 422 PANTHER DUF581 FAMILY PROTEIN 69 420 - -
Lja1g3819 422 Pfam zinc-finger of the FCS-type, C2-C2 350 397 IPR007650 -
Lja1g3819 422 MobiDBLite consensus disorder prediction 80 105 - -
Lja1g3819 422 PANTHER FCS-LIKE ZINC FINGER 11 69 420 IPR044585 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3819 Lja-Chr1 48222663 48225515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3819 - - lja:Lj1g3v1932620.1 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2808 5 55388562 55390165 Lja1g3819 1 48222663 48225515 PCT