Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3343 ATGATACCAAACCCTCCAAACTCATCTCACCACAACCCTCCAACCACCGTCCCCGACGCCGTGGCCCGCTACCACACCCACGCGTTCTCCCCCAACCAGTGCTGCTCCGCCGTCGTCCAAGAGATTGCCGCCCCTGTCTCCACCGTCTGGTCCGTCGTCCGCCGCTTCGACAACCCCCAGGCCTATAAAAACTTCGTCAAGAGCTGCCACGTCATCCTCGGCGACGGCGACGTCGGGACCCTCCGCGAGGTCCGCGTGATCTCCGGCCTACCCGCCGCCGTCAGCACCGAGCGCCTCGACGTCCTCGACGACGAGCGCCACCTTATCAGCTTCAGCATGGTTGGCGGCGACCACCGCCTCACCAACTACCGCTCTGTCACCACCCTCCACCCCAGCCCCGTTTCGGACGCCGACGGAAACCACCGCTCCGGCACGGTGGTTGTGGAGTCCTACGTCGTTGATGTGCCACCGGAAAACACCTCCGAGGACACGCGCGTGTTCGTGGACACCATCCTCCGGTGCAACCTCCAATCTCTTGCGAAATTCGCTGAGAACTTGCCGCATCGAAACTGA 573 0.6353 MIPNPPNSSHHNPPTTVPDAVARYHTHAFSPNQCCSAVVQEIAAPVSTVWSVVRRFDNPQAYKNFVKSCHVILGDGDVGTLREVRVISGLPAAVSTERLDVLDDERHLISFSMVGGDHRLTNYRSVTTLHPSPVSDADGNHRSGTVVVESYVVDVPPENTSEDTRVFVDTILRCNLQSLAKFAENLPHRN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3343 190 PANTHER - 14 188 - -
Lja1g3343 190 Pfam Polyketide cyclase / dehydrase and lipid transport 36 181 IPR019587 -
Lja1g3343 190 Gene3D - 4 190 IPR023393 -
Lja1g3343 190 SUPERFAMILY Bet v1-like 34 183 - -
Lja1g3343 190 CDD PYR_PYL_RCAR_like 34 184 - -
Lja1g3343 190 PANTHER ABSCISIC ACID RECEPTOR 14 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3343 Lja-Chr1 41586906 41588630 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3343 K14496 - gmx:100805378 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3343 1 41586906 41588630 Lja6g0351 6 8989825 8990988 ECH
Lja1g3343 1 41586906 41588630 Lja1g3343 1 41586906 41588630 ECH