Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3329 ATGTTCCCACAATTCCTCATCTTCTTCCTCCTCTGCACTCTCTCTGCATCTCTCAACACAGATCAAGAAAAAACTGATGAAGATTTCGGGCGTTCATTGGATCCCAAACTGTTGGGTTTGGAAAAGCAAGAGAAGCTGAGCCATTTCAGGTTCTTCTGGCATGACATAGTGAGTGGAACCAACCCTTCTTCTGTGGTAATTGTTCCCCCACCATTGAAGAACTCAAACACAGCCTTTGGTTTGGTGAACATGATTGAGAACCCTTTGACACTGGGACCCCAATTGAGCTCCAAATTGGTGGGGAAAGCACAAGGGTTCTATGCCTCCACATCACAGAGTGAGGTTGATCTGATCATGGCCATGAACTTTGCAATCACTGAAGGGAAGTACAATGGGAGCACCATCACTGTTTTGGGGAGGAATCCTGTTTTCAACAAGGTGAGGGAAATGCCTGTGATTGGTGGGAGTGGACTCTTTCGTTTTGCAAGGGGATATGCTGAGCTTAGAACTCATTGGTTCTCTCCCAAGACAAACAATGCTATTGTTGAGTACAATATCTATGTGTTGCATTATTAA 576 0.4479 MFPQFLIFFLLCTLSASLNTDQEKTDEDFGRSLDPKLLGLEKQEKLSHFRFFWHDIVSGTNPSSVVIVPPPLKNSNTAFGLVNMIENPLTLGPQLSSKLVGKAQGFYASTSQSEVDLIMAMNFAITEGKYNGSTITVLGRNPVFNKVREMPVIGGSGLFRFARGYAELRTHWFSPKTNNAIVEYNIYVLHY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3329 191 Pfam Dirigent-like protein 47 188 IPR004265 -
Lja1g3329 191 PANTHER DIRIGENT PROTEIN 1 190 - -
Lja1g3329 191 PANTHER NUCLEOPORIN-RELATED 1 190 IPR004265 -
Lja1g3329 191 Gene3D - 38 188 IPR044859 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3329 Lja-Chr1 41378391 41379612 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3329 - - gmx:100796078 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3329 1 41378391 41379612 Lja3g3384 3 66697456 66698419 PCT
Lja3g3385 3 66717310 66718198 Lja1g3329 1 41378391 41379612 PCT