Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3296 ATGGCTTATCCTTACCCATATCAACAGCAACCACAGCCCTCCGCCTCCGCCCCTATGCCGGCGGTTCCCACCACCGTGTTTGGCCCACAGTACTGTGCTCCGTACCCGGTGGATCTGGCTATCGTTAAGAAGGTCATGACCATTTCCGACGGAAACTTTGTTGTCACTGACATCAACGGCAACATCGTCTTCAAAGTTAAGGGCTCTCTCTTAACGCTCCGTGATCGCCGTGTCTTGATCGACGCCGCCGGCAACCCCATCGCCACTCTACGCCGCAAGATAATGACTGCACATGATCGCTGGCAAGCTTATAGGGGTGAGAGCACAGAGGCCAAAGATCTCATCTTTACTTTGAAGAGATCGTCACTGATCCAGTTTAAGACCAAATTAGATGTGTTTTTAGCCACTAACACCAAAGAAGACGTTTGTGATTTCAAGGTTAAAGGGAGTTGGTTTGAACGATCTTGCGTTGTTTATGCTGGAGAATCTAACACCATTGTTGCCCAGATGCATAAGAAGCACACTGTTCAGAGTATTTTGATTGGGAAAGACAATTTCACGGTCACGGTATATCCCAACATTGATTATGCGTTCATAGTGGCGCTTATTGTGATTCTGGATGAGATTAACGAGGATGAGAAGGCTGAATAA 651 0.4747 MAYPYPYQQQPQPSASAPMPAVPTTVFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTLRDRRVLIDAAGNPIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSSLIQFKTKLDVFLATNTKEDVCDFKVKGSWFERSCVVYAGESNTIVAQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIVALIVILDEINEDEKAE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3296 216 PANTHER - 21 214 IPR007612 -
Lja1g3296 216 Pfam LURP-one-related 26 205 IPR007612 -
Lja1g3296 216 Gene3D - 24 216 IPR038595 -
Lja1g3296 216 PANTHER TUBBY C 2 PROTEIN 21 214 - -
Lja1g3296 216 SUPERFAMILY Tubby C-terminal domain-like 25 210 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3296 Lja-Chr1 40947641 40950631 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3296 - - ccaj:109788428 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3296 1 40947641 40950631 Lja1g3296 1 40947641 40950631 ECH
Lja1g3296 1 40947641 40950631 Lja3g3400 3 67083552 67084990 PCT