Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3236 ATGGATGCTCTGAGATCAGAAACCGTGTGCTGGCTGACCCACTTGCTACAAACACAAACACAAGCTTCATTATCTTCTCCGAGTTTAAGGTCCACTGTAATAAATCACTTCCTCGTTTTCGCTCGAACTCTTCTTCTCACTAGGTTCGTGTTTCTTCATCGCAGTGATCCAACCAAATCCCAAATCTCAATTTTGAAGGTTTCCGTTGATTTAGTTTACAAGTTTGTGGCTTCAAACAATCATATGGGAAATTGCGTGGCTAAGTATCATGCTAAGGATGATGATTCTGATCATGTGGAGTTTGCTGGGGATAATGTGACAATTATTACCACCAAAGAAGCTTGGGACCAAAAGTTGGAAGAAGCCAAGAGGGATGGCAAAATTGTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGCAAGATAATTGCACCATATTACTGCGAGTTATCTGAGAAGTACACATCTATGATGTTCTTATTAGTTGATGTGGATGAACTAACTGACTTCAGCACTTCATGGGACATCAAAGCCACCCCTACTTTCTTCTTTCTTAAAGATGGGCAACAACTTGACAAACTCGTAGGAGCCAACAGGCCAGAGCTGGAGAAGAAGGTTGTCGCCATTGCTGACTCGGTCCCCGAGTCGAAGCAGTGA 660 0.4288 MDALRSETVCWLTHLLQTQTQASLSSPSLRSTVINHFLVFARTLLLTRFVFLHRSDPTKSQISILKVSVDLVYKFVASNNHMGNCVAKYHAKDDDSDHVEFAGDNVTIITTKEAWDQKLEEAKRDGKIVIANFSATWCGPCKIIAPYYCELSEKYTSMMFLLVDVDELTDFSTSWDIKATPTFFFLKDGQQLDKLVGANRPELEKKVVAIADSVPESKQ* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3236 219 PANTHER THIOREDOXIN 87 218 - -
Lja1g3236 219 CDD TRX_family 119 207 - -
Lja1g3236 219 PANTHER THIOREDOXIN 87 218 - -
Lja1g3236 219 Pfam Thioredoxin 107 206 IPR013766 -
Lja1g3236 219 ProSiteProfiles Thioredoxin domain profile. 100 212 IPR013766 -
Lja1g3236 219 SUPERFAMILY Thioredoxin-like 85 209 IPR036249 -
Lja1g3236 219 ProSitePatterns Thioredoxin family active site. 130 148 IPR017937 -
Lja1g3236 219 Gene3D Glutaredoxin 82 219 - -
Lja1g3236 219 PRINTS Thioredoxin family signature 176 187 - -
Lja1g3236 219 PRINTS Thioredoxin family signature 137 146 - -
Lja1g3236 219 PRINTS Thioredoxin family signature 129 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3236 Lja-Chr1 39958793 39964488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3236 K03671 - gmx:100813401 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3236 1 39958793 39964488 Lja1g3236 1 39958793 39964488 ECH
Lja1g3236 1 39958793 39964488 Lja3g4783 3 89863638 89866972 PCT