Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3211 ATGAAAGAAAATTCAGGGAAAAGGAGGAATGTGTGCCTGGCAGTAACAGGTGGTGTTGTGGTCACAATTGTGTTGCTAGTTGTGATCTTAGCACTAACAGTGTTCAAACCACAACACCCCATTACCAAGGTGGACTCAATCCAGCTTCAGGACATGGACATGAACTTTGACATGTTCAGAATGAGGATAGATTTGAACGTGACATTGCACGCAGACGTGACCGTGAAGAACCCGAACAAGTTTGGATTCAAGTACTCGAATGGCACTGCAGAAGTTAGTTATAGAGGGGAGAAGATTGGTGAAGCTCCTATCCCTAGTGGTGAAATATCTTCTGGGGAGAGTAAAGGCATGAACTTGACACTCACTGTTATGGCTGATCGTTTTTTCAACAATCCTCAGTATTTCTCGGATGCTAAATCGGGTACATTGCCCCTCAACACCGTGACCAAAATTGCTGGTGAAGTTAGCATCTTAGGCTTCATCAAGTTTCATGTGGAATCTTTCTCATCTTGTGATTTTAGCATCAATCTTAACGATAAAACAGTTGTGGAGAAGATGTGCCACTACAAGAGTAAGATTTGA 582 0.4261 MKENSGKRRNVCLAVTGGVVVTIVLLVVILALTVFKPQHPITKVDSIQLQDMDMNFDMFRMRIDLNVTLHADVTVKNPNKFGFKYSNGTAEVSYRGEKIGEAPIPSGEISSGESKGMNLTLTVMADRFFNNPQYFSDAKSGTLPLNTVTKIAGEVSILGFIKFHVESFSSCDFSINLNDKTVVEKMCHYKSKI* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3211 193 Pfam Late embryogenesis abundant protein 73 167 IPR004864 -
Lja1g3211 193 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 4 192 - -
Lja1g3211 193 SUPERFAMILY LEA14-like 33 164 - -
Lja1g3211 193 Gene3D - 28 175 - -
Lja1g3211 193 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 4 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3211 Lja-Chr1 39676749 39677330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3211 - - lja:Lj1g3v2558430.1 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3211 1 39676749 39677330 Lja1g3211 1 39676749 39677330 ECH
Lja1g3211 1 39676749 39677330 Lja3g4769 3 89772491 89774923 PCT