Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3184 ATGGCCATTTTGAAGAGCTACAGCACCGTGTGCATCACAGGAACCGGTTTTCCTGTTTGCCCCTCCAATGCCACCAACAATAAAACCACCAGGAACTCATGCTGGAAGCCTGCACAGGCAGCCTTGAAACCCAACTTCCACCTCCCGATGCGCAGTTTTGAGTTGAAAAATAGGACTTCGACCGAGGACATAAAAAGTCTGAGATTGATAACAGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATAACTTGGTGAATACACAGATTGAAAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTCATTGCGCACACAGTCAACTGTTTTGGTGGTAACATTAAGGTCATTGGAAACACTGGAAGCAACTCCACCAGGGAAGCGATTCATGCCACGGAGCAGGGTTTTGCTGTTGGAATGCATGGTGCCCTTCACATAAACCCCTACTATGGAAAAACTTCTTTGGATGGTATGATTGCTCACTTTCAAAGTGTGTTTTCAATGGGGCCTTCGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCAGATGTAATTCAAACCATAGCTCAAAGTGCTTACTTTGCTGGTGTCAAGGAATGCGTGGGAAATGACCGGATCAAGCAGTATACAGATAATGACATTGTTGTATGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAACCTAATTCCTGGTTTAATGCGGGAACTCATGTTTCGGGGCGAAAATCCTTTACTGAATTCTAGGCTCTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAATCCCATCGGTTTGAATACGGCTCTCGCTCAACTTGGAGTTGTCAGGCCGGTTTTTAGGCTACCATTTGTACCCCTTCCTGTGGATAAAAGGATAGAATTCGCCAATTTGGTGAAGGCAATTGGTCGAGAGCATTTTGTTGGAGATAGAGATGTTGAGGTTCTTGATGATGACGACTTTTTCTTGGTTAGTCGCTATTGA 1101 0.4478 MAILKSYSTVCITGTGFPVCPSNATNNKTTRNSCWKPAQAALKPNFHLPMRSFELKNRTSTEDIKSLRLITAIKTPYLPDGRFDLEAYDNLVNTQIENGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGNIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMIAHFQSVFSMGPSIIYNVPSRTGQDIPPDVIQTIAQSAYFAGVKECVGNDRIKQYTDNDIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFRGENPLLNSRLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVDKRIEFANLVKAIGREHFVGDRDVEVLDDDDFFLVSRY* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3184 366 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 69 338 IPR005263 GO:0008840|GO:0009089
Lja1g3184 366 ProSitePatterns Dihydrodipicolinate synthase signature 2. 195 225 IPR020625 GO:0016829
Lja1g3184 366 PRINTS Dihydrodipicolinate synthase signature 99 120 IPR002220 GO:0016829
Lja1g3184 366 PRINTS Dihydrodipicolinate synthase signature 190 207 IPR002220 GO:0016829
Lja1g3184 366 PRINTS Dihydrodipicolinate synthase signature 167 183 IPR002220 GO:0016829
Lja1g3184 366 PRINTS Dihydrodipicolinate synthase signature 135 153 IPR002220 GO:0016829
Lja1g3184 366 ProSitePatterns Dihydrodipicolinate synthase signature 1. 102 119 IPR020624 GO:0016829
Lja1g3184 366 SMART DHDPS_2 66 342 IPR002220 GO:0016829
Lja1g3184 366 Pfam Dihydrodipicolinate synthetase family 67 340 IPR002220 GO:0016829
Lja1g3184 366 PANTHER DIHYDRODIPICOLINATE SYNTHASE-RELATED 3 366 - -
Lja1g3184 366 CDD DHDPS 68 338 IPR005263 GO:0008840|GO:0009089
Lja1g3184 366 Gene3D Aldolase class I 60 366 IPR013785 -
Lja1g3184 366 PANTHER DIHYDRODIPICOLINATE SYNTHASE 3 366 IPR002220 GO:0016829
Lja1g3184 366 SUPERFAMILY Aldolase 69 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3184 Lja-Chr1 39279092 39281928 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3184 K01714 - gmx:100788930 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3184 1 39279092 39281928 Lja1g3184 1 39279092 39281928 ECH
Lja1g3184 1 39279092 39281928 Lja3g1433 3 15161969 15163668 PCT