Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3055 ATGAAGAAATTTGTGCTCAAGTTGGATTTGCCAGATGACAAGGCTAAACAGAAGGCCCTGAAAACAGTGTCAACACTTCCAGGGATTGATGCCATTTCCATGGACATGAAGGAGAAGAAATTAACAGTGGTAGGAACTGTAGATCCAGTCACTGTAGTGAGCAAATTGCGCAAATACTGGCAAGCAGATCTAGTCTCTGTAGGACCTGCAAAGGAGCCTGAAAAGAAAGAGGAACCAAAGAAAGAAGAACCCAAAAAAGAGGAAGAGAAGAAAGATGAGCCAAAGAGTGAAGAACCCAAGAAAGAAGAGGCGAAGAAGGAAGAGCCAAAGAAAGAAGAAGAGAAGAAAGATGAAAAGAAAGAAGAGGAGAAAAAGAAAGAGCAACCAGCTCAAATTGACCCTGTTTTAGAGTGGGTCAAGGCTTATAGGCAATATAATCCCCACATGACCACATATTACCATGTTCAAAGCATGGAAGAGAATCCGAATGCTTGTGTGATTTGTTAA 507 0.4142 MKKFVLKLDLPDDKAKQKALKTVSTLPGIDAISMDMKEKKLTVVGTVDPVTVVSKLRKYWQADLVSVGPAKEPEKKEEPKKEEPKKEEEKKDEPKSEEPKKEEAKKEEPKKEEEKKDEKKEEEKKKEQPAQIDPVLEWVKAYRQYNPHMTTYYHVQSMEENPNACVIC* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3055 168 MobiDBLite consensus disorder prediction 64 133 - -
Lja1g3055 168 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 112 - -
Lja1g3055 168 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 84 168 - -
Lja1g3055 168 Pfam Heavy-metal-associated domain 15 58 IPR006121 GO:0046872
Lja1g3055 168 MobiDBLite consensus disorder prediction 69 131 - -
Lja1g3055 168 Gene3D - 1 72 - -
Lja1g3055 168 SUPERFAMILY HMA, heavy metal-associated domain 2 58 IPR036163 GO:0046872
Lja1g3055 168 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 112 - -
Lja1g3055 168 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 84 168 - -
Lja1g3055 168 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3055 Lja-Chr1 36979749 36982956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3055 - - gmx:100527231 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3055 1 36979749 36982956 Lja1g3055 1 36979749 36982956 ECH
Lja1g3055 1 36979749 36982956 Lja3g1851 3 21059608 21061486 PCT