Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3047 ATGAGACTGGGTTTGGTGTCATTAAGCGTTATCAGTGGAGTGAGTCTGATATTTGCAGTGTTGAAAATGTCGCAGTTGTTGGATAAAGCCAAAGCCTTTGTTGCTGAGAAAGTGGCCAACATGCCTATGCCTGAGGCCAGTGTTACAGACGTTGACTTCAAGAAGGTGAGTCGCGAGTGTGTTGAGTACCTGGCTAAGATCTCTGTTTCCAACCCTTATTCAACACCGATTCCTATCTGTGAGATCAACTACACCCTCAAAAGTGCTGGCAGGGAGATAGCATCAGGCACCATACCAGACCCAGGTTCACTGAAGGCAAGTGACACAACACTGCTGGAAGTGCCGGTGAAGGTAGCTCACAGCATATTGCTGAGCATAGCAAAGGACATTGGTGCTGATTGGGACATAGACTATCATTTGGATATTGGTCTTGTCATTGACCTCCCAGTCATTGGCAACTTCACCATTCCTCTTTCTCAGAAGGGAGAGATCAAGCTCCCAACCATCACTGACATGTTTGCCTAG 525 0.4705 MRLGLVSLSVISGVSLIFAVLKMSQLLDKAKAFVAEKVANMPMPEASVTDVDFKKVSRECVEYLAKISVSNPYSTPIPICEINYTLKSAGREIASGTIPDPGSLKASDTTLLEVPVKVAHSILLSIAKDIGADWDIDYHLDIGLVIDLPVIGNFTIPLSQKGEIKLPTITDMFA* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3047 174 PANTHER - 15 173 IPR045043 -
Lja1g3047 174 Gene3D - 39 173 - -
Lja1g3047 174 SMART why 46 163 IPR013990 GO:0009269
Lja1g3047 174 SUPERFAMILY LEA14-like 23 172 - -
Lja1g3047 174 Pfam Late embryogenesis abundant protein 66 162 IPR004864 -
Lja1g3047 174 PANTHER DESICCATION-RELATED PROTEIN LEA14-RELATED 15 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3047 Lja-Chr1 36872416 36874736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3047 - - gmx:547837 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3047 1 36872416 36874736 Lja1g3047 1 36872416 36874736 ECH
Lja1g3047 1 36872416 36874736 Lja3g1842 3 20893540 20895050 PCT