Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2227 ATGAAGCTATTCATGTTTTTCTTAGCATGGGCTTTTGCTCTTTTAGCTTCATCATTGGCTTCTGCTGCGACTGTGGAACAAATATTCAAAGTTCAAAACAGGACTATCAAACGCTTGTGCAATGAGCGAGTAATTGTCACAGTTAATGGTCTTTTCCCTGGACCAACGATAAATGTCCACGAAGGTGACACTGTGATTGTCCATGTATTCAACGAGGCACCCTACAATATCACTATTCACTGGCATGGAGTGTTTCAGCTCTTTAGTGGTTGGGCAGATGGTCCTGAATATGTAACTCAGTGCCCAATTAGTTCAGGAAATAATTATACATATAAATTCAAGGTGCAAAACCAAGAAGGAACATTATGGTGGCACGCTCATGCATCTGTTTTACGAGCCACAGTTCATGGTGCTTTCATCATTCACCCTCGTTCTGGTCAATTTCCATTTCCCAAACCCTACAAGCAAATTCCTATTATATTAGGTGATTGGTATAATGCTGGTGTTGAGGATATGGAGAAAGCTCTCGCCGCTGGGGGTCGTCCTGAGTTATCTAGTTCCTTCACAATCAATGGATTGCCTGGAGATATCTTCAGTTGTTCTCAAAAAGGACAGAATTCAGAGACATTCAAGATGAAGGTGAAGCAAGGAAAAACCTACATGCTACGAATGGTCAACGCTGTACTCGAACTGCATCTATTCGTCACACTAGCTAATCACAATTTCACAGTTGTTGCTGTGGATGCTACATACACTGACCCTTATGTGACCGATGTCATTGTTATTGCCCCTGGCCAAACCCTTGATGCTTTATTCACCGCAAACCAACCCATTGGTTCATATTACATGGTTGCATCTCCTTATAAATCTGGTGGTAAAATGTTTGATAATATCACATCTCGTGGTATAGTCGTTTATGATCATCAATATGCACAATACTCATCGTCACATCTTGTGATGCCATCCCTACCATCATTGAACCCTATGATGCCATTCCTACCACCCTTCAATGACACTCCAACAGCTCACAAATTCTATAGCAACATAACTAGTTTAGTAGGGGCCCCGCATTGGGTTCCAGTCCCACTTGAGGTGGATGAGCACATGTTCATTACCGTTGGATTAAACCTACAAAGGTGTGATCCAGCGACCGTCACCAATGACACGTGTAAGGGTCCAATGAATCATACTTTATCTCCTAGCATGAACAATGAGTCATTTGTGCTCCCTAAGGGGAGAGGGTACTCAATGTTGGAAGCGTTTTTTGAAAATATGAGTGGAGTGTATACTACAGATTTCCCTAGCAAGCCTCCAGTTATGTTTGACTTCACAAATCCTGACATTAGATTTGATTTGAATCTTATATTTGCCCCAAAATCAACAAAGGTAAAGAAGCTCAAGTTCAATTCAACGGTGGAGATTGTGTTTCAAAATACAGCTTTTATTCATACGGATAACCATGCCATGCATCTTCATGGGTTTAACTTCCATGTTTTGGCTCAAGGGTTTGGGAATTTCGACCCCACCAGTGACGAAGCCAAGTTTAACTTGGTGAACCCTCAAATACGCAACACAATTGGTGTGCCTGTGGGAGGATGGGCTGTCATCAGATTCCAAGCAAACAATCCAGGGGTATGGTTTGTGCATTGCCATGTGGAACATCATACTCACCGGGGATTTAATATGGCTTTTGAGGTTGAGAATGGACCAACTTTGTCAACTTCACTCACTCCACCCCCAGCTGATCTGCCAAAATGTTAA 1761 0.4225 MKLFMFFLAWAFALLASSLASAATVEQIFKVQNRTIKRLCNERVIVTVNGLFPGPTINVHEGDTVIVHVFNEAPYNITIHWHGVFQLFSGWADGPEYVTQCPISSGNNYTYKFKVQNQEGTLWWHAHASVLRATVHGAFIIHPRSGQFPFPKPYKQIPIILGDWYNAGVEDMEKALAAGGRPELSSSFTINGLPGDIFSCSQKGQNSETFKMKVKQGKTYMLRMVNAVLELHLFVTLANHNFTVVAVDATYTDPYVTDVIVIAPGQTLDALFTANQPIGSYYMVASPYKSGGKMFDNITSRGIVVYDHQYAQYSSSHLVMPSLPSLNPMMPFLPPFNDTPTAHKFYSNITSLVGAPHWVPVPLEVDEHMFITVGLNLQRCDPATVTNDTCKGPMNHTLSPSMNNESFVLPKGRGYSMLEAFFENMSGVYTTDFPSKPPVMFDFTNPDIRFDLNLIFAPKSTKVKKLKFNSTVEIVFQNTAFIHTDNHAMHLHGFNFHVLAQGFGNFDPTSDEAKFNLVNPQIRNTIGVPVGGWAVIRFQANNPGVWFVHCHVEHHTHRGFNMAFEVENGPTLSTSLTPPPADLPKC* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2227 586 TIGRFAM laccase: laccase 26 586 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lja1g2227 586 CDD CuRO_1_LCC_plant 29 143 IPR034288 GO:0005507
Lja1g2227 586 Gene3D - 14 143 IPR008972 -
Lja1g2227 586 Gene3D - 383 586 IPR008972 -
Lja1g2227 586 SUPERFAMILY Cupredoxins 359 586 IPR008972 -
Lja1g2227 586 CDD CuRO_2_LCC_plant 157 306 IPR034285 -
Lja1g2227 586 Pfam Multicopper oxidase 157 308 IPR001117 -
Lja1g2227 586 Gene3D - 154 326 IPR008972 -
Lja1g2227 586 Pfam Multicopper oxidase 31 145 IPR011707 GO:0005507
Lja1g2227 586 SUPERFAMILY Cupredoxins 20 166 IPR008972 -
Lja1g2227 586 PANTHER LACCASE 1 586 - -
Lja1g2227 586 Pfam Multicopper oxidase 433 568 IPR011706 GO:0005507|GO:0016491
Lja1g2227 586 PANTHER MULTI-COPPER OXIDASE 1 586 IPR045087 -
Lja1g2227 586 SUPERFAMILY Cupredoxins 150 356 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2227 Lja-Chr1 25887562 25894026 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2227 K05909 - gmx:100814392 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2227 1 25887562 25894026 Lja1g2227 1 25887562 25894026 ECH
Lja1g2227 1 25887562 25894026 Lja3g3295 3 64446681 64451291 PCT