Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2208 ATGGTAGAGGATAGAAAAGTTGGGGTGGCAACTGACTTCTCCAAGAGCAGCAACAGTGCTCTCAAATGGGCCATTGAAAACATGGCTGATAAAGGTGACACGTTTTATATTATCCACGTCATGAGCGATGGATCCCGTACCAATATCTGGGCTAAATCTGGTTCTCCTCTTATTCCTTTGTCAATTTTAAGACAACCAGAGGCAATGAGCAACTATGGTGTGCAAACTGATCCTGAGGTTCTTGATATGCTTGACGCTGCTGCCGGACAAAAGGAGGTGAACTTTGTGGCAAAATTGTACTGGGGTGAAGCAAGACAGAAACTCATTGACTCTATTGAAGATCTAAAGCTGGACTCTCTGGTTATGGGAAGCAGAGGCCGTGGTTCAATCAAAAGGATATTAATGGGAAGTGTTAGCAACTTCTTGATGATACATGCTACATGTCCAGTAGCGATTGTTAGGGATTCAAGCAAGAGCAAGTAG 483 0.4369 MVEDRKVGVATDFSKSSNSALKWAIENMADKGDTFYIIHVMSDGSRTNIWAKSGSPLIPLSILRQPEAMSNYGVQTDPEVLDMLDAAAGQKEVNFVAKLYWGEARQKLIDSIEDLKLDSLVMGSRGRGSIKRILMGSVSNFLMIHATCPVAIVRDSSKSK* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2208 160 Gene3D HUPs 1 160 IPR014729 -
Lja1g2208 160 PRINTS Universal stress protein signature 4 22 IPR006015 -
Lja1g2208 160 PRINTS Universal stress protein signature 114 126 IPR006015 -
Lja1g2208 160 PRINTS Universal stress protein signature 132 154 IPR006015 -
Lja1g2208 160 PANTHER OS05G0453700 PROTEIN 4 158 - -
Lja1g2208 160 PANTHER IMP2'P 4 158 - -
Lja1g2208 160 Pfam Universal stress protein family 5 154 IPR006016 -
Lja1g2208 160 CDD USP_Like 6 153 - -
Lja1g2208 160 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2208 Lja-Chr1 25584998 25587610 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2208 - - zju:107430676 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2208 1 25584998 25587610 Lja1g2208 1 25584998 25587610 ECH
Lja1g2208 1 25584998 25587610 Lja3g3232 3 62985724 62987776 PCT