Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1346 ATGAAGCCTGGCACTGATGCATGGCTCTCAGCCTGCCATGTTGTGAGGACTGCCCTAGAGCACAATGGTTGTTTCGCCGCCCGCTTCAATAAAGTCGGCAAAGAGCTTCGCGACGCCGTTATCTCTGATTTGGACGAATTGTTTGGTCTCCCACTTGAAACAAAATCACAAAAAATCAGTGAAAAACTTTTCCATTGCTACTTTGGAGAAGCCCCCTTGTTTGCCTTACATGAGTCTCTGGCTATTGACAATCCATTATCCGCAGATGGATGTCGAAAATTCACCAATATCATGTGGCCTGAAGGGAACGACCATTTGAGGGTTTTAAATTGTGATTGCAGTGAAAGGATAAATGAGTATAGTAAGGTATTGGGAGAATTAGACCGATTGAGCATGAGGATGGTGTTTGAGAGCTATGGTGTGGATATGCAACGATGCGATTCTTTCTTAGAATCAAACAATTACCTTCTTCGATGCTTAAAACACAGAGCACCCCAGATGGATGAAGATAATGTTGGGTTGGATTCTCACACGGACTTGACCGTGACATCCATATTGCATCAGCTGAATAATGCGGATGGCTTGGAAATCAAACTGAAAGATGGGGAGTGGATCAGTGTTGATGCCTCACCCTCCATCTTTGTGGTCATGGCCGGAGATGTACTCAATGTGTGGAGTAATGGCAAGATAAGGCCATGTGAACACAGGGTTGTAATGAATGCAAAGCAAACCAGATACTCCATGGGACTATTTTCTTTTTGGACTACACTCTTTTATTTCATGGAGGGTTATAGTAAGGTGATGGAGATACCAGAGGAGCTAGTGAGTGAGCAACACCCCTTTTTCTTTGACAAACTGAAAATCAGAGAAACTTATCCCCGAATCCAAGCTTATTGTGGAATTTGA 906 0.4349 MKPGTDAWLSACHVVRTALEHNGCFAARFNKVGKELRDAVISDLDELFGLPLETKSQKISEKLFHCYFGEAPLFALHESLAIDNPLSADGCRKFTNIMWPEGNDHLRVLNCDCSERINEYSKVLGELDRLSMRMVFESYGVDMQRCDSFLESNNYLLRCLKHRAPQMDEDNVGLDSHTDLTVTSILHQLNNADGLEIKLKDGEWISVDASPSIFVVMAGDVLNVWSNGKIRPCEHRVVMNAKQTRYSMGLFSFWTTLFYFMEGYSKVMEIPEELVSEQHPFFFDKLKIRETYPRIQAYCGI* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1346 301 Gene3D - 1 296 IPR027443 -
Lja1g1346 301 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 155 257 IPR005123 -
Lja1g1346 301 Pfam 2OG-Fe(II) oxygenase superfamily 164 251 IPR044861 -
Lja1g1346 301 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 287 - -
Lja1g1346 301 SUPERFAMILY Clavaminate synthase-like 3 290 - -
Lja1g1346 301 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1346 Lja-Chr1 14192842 14200327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1346 113 290 Glycosyltransferase AT5G59530 28.652 1.10e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1346 - - gmx:100775440 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2186 5 35394737 35400658 Lja1g1346 1 14192842 14200327 PCT