Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1152 ATGGGTGCTTCACAATCATCAACCTCAGAGAAAACCGTCCATGAATTCACCGTTAAGGATGCTAGAGGCAAAGATGTGAACCTCAGCACTTACAAAGGGAAGGTTCTTCTCATAGTTAACGTCGCTTCCAAATGTGGATTTACTAATTCCAATTACACCCAGTTAACTGAGCTTTACCAAAGATACAAGGACAAAGGTCTTGAGATATTGGCATTTCCATGCAACCAGTTTTTGAAGCAAGAGCCTGGGACTGGCCAGGAAGCTGAGCAATTTGCCTGTACAAGATTCAAGGCTGAGTATCCCATTTTCGGAAAGGTACGTGTCAATGGAGCTGACACAGCACCTCTTTACAGATTCCTAAAACAAAAGAAAGGTGGATTTCTGGGGTCTAGTATAAAGTGGAATTTCACCAAATTTTTGGTTGACAAGGAAGGGAATGTCCTCCAGCGTTATGGAACAACCACCACACCGTTGGCCATTGAAAATGACATCAAGAAGGCATTGGGAGAGGCTTGA 516 0.4341 MGASQSSTSEKTVHEFTVKDARGKDVNLSTYKGKVLLIVNVASKCGFTNSNYTQLTELYQRYKDKGLEILAFPCNQFLKQEPGTGQEAEQFACTRFKAEYPIFGKVRVNGADTAPLYRFLKQKKGGFLGSSIKWNFTKFLVDKEGNVLQRYGTTTTPLAIENDIKKALGEA* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1152 171 Pfam Glutathione peroxidase 13 121 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 PRINTS Glutathione peroxidase family signature 31 48 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 PRINTS Glutathione peroxidase family signature 67 83 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 PRINTS Glutathione peroxidase family signature 132 141 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 CDD GSH_Peroxidase 12 164 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 ProSitePatterns Glutathione peroxidases signature 2. 70 77 IPR029760 -
Lja1g1152 171 Gene3D Glutaredoxin 3 170 - -
Lja1g1152 171 SUPERFAMILY Thioredoxin-like 12 169 IPR036249 -
Lja1g1152 171 PIRSF Glutathion_perox 1 171 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 PANTHER GLUTATHIONE PEROXIDASE 1 170 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 ProSitePatterns Glutathione peroxidases active site. 33 48 IPR029759 -
Lja1g1152 171 ProSiteProfiles Glutathione peroxidase profile. 3 171 IPR000889 GO:0004602|GO:0006979
Lja1g1152 171 ProSiteProfiles Thioredoxin domain profile. 7 169 IPR013766 -
Lja1g1152 171 PANTHER GLUTATHIONE PEROXIDASE 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1152 Lja-Chr1 11828538 11833626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1152 - K00432 gmx:100306136 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1152 1 11828538 11833626 Lja1g1152 1 11828538 11833626 ECH
Lja1g1152 1 11828538 11833626 Lja5g2011 5 26186666 26188031 PCT