Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1124 ATGGAGTTAAGCAATGTGACCCTCGAGATCTTCACCAAACTAGAAACCAAATGGCTTTCCCACTGCGAATCCACCGTCAAAACCCGCATACTCACCATTGACGGCGGAGGAACCACCGCCATTGTCGCCGGAGCCGCTTTAATCCACCTTGAGGACCAGATCCGATCCCAAACCTCCGACCCCCACGCACAAATCGCTGACTACTTCGACATCATCGCCGGCACCGGCATTGGCGCAATCCTGGCCGCCATGATCACCGCTGACGACGGTTTCGGCAGGCCACTCCACACCGCTAAAGACGCTGTTGACATCATCACTAACAAAAACAAAGAACTCTATAAGGCGAAGTTCGCCGGGGTTTTCCGCCGGCAACGGAGATTCTCCTCGAGAAGCATGGAGAACACGTTGAAGCAAGTCTTCTGCCGAAAAGAAGATCAACGACGTTTGTTGACACTGAAGGACACGTGTAAGCCATTGTTGATCCCTTGCTTTGATCTGAAGAGCTCTGCGCCGTTCGTATTCTCCAGAGCCGACGCGTCGGAATCGCCGAGTTTCAACTTCGAGCTCTGGAAGGTTTGCCGAGCCACGTCAGCGACGCCGGGGGTGTTCAAGCCATTCCAGTTTAACTCCATCGACGGAAGAACCTCATGCTCCGCCGTCGACGGCGGATTGGTTATGAACAACCCGGCGGCAGCGGCGGTCACGCACGTCCTCCACAACAAGCGTGACTTCCCGTCGGTGAACGGCGTCGAGGATCTCCTTGTTCTCTCCATCGGGAACGGATCGCCGGTGAGGAAAATGAGCGACCACCACCGCGAGTGCTCGACGTCGTTGGTGGTTGACATCGCGCTCGACGGCGTTTCCGAGATCGTTGACCAGATGGTGGGAAACGCATTCTGTTGGAACCGTACGGACTACGTGAGGATTCAGGCGTTTGGTTTGGGAGGAGAAGAAAACGATGTGTTGAAAGAGAGAGCGTTGGAATCGTTACCGTTTGGCGGGAAGCGGTTACTAGAAGAAAGTAACGGTGAGAGGATCAAGAGCTTCGTGCAACGCCTTGTTGCTACCGGAAAATCTAGTTTACCACCAAGTCCTTGTAAGGTTCCGCCGTAA 1113 0.5454 MELSNVTLEIFTKLETKWLSHCESTVKTRILTIDGGGTTAIVAGAALIHLEDQIRSQTSDPHAQIADYFDIIAGTGIGAILAAMITADDGFGRPLHTAKDAVDIITNKNKELYKAKFAGVFRRQRRFSSRSMENTLKQVFCRKEDQRRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKVCRATSATPGVFKPFQFNSIDGRTSCSAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLLVLSIGNGSPVRKMSDHHRECSTSLVVDIALDGVSEIVDQMVGNAFCWNRTDYVRIQAFGLGGEENDVLKERALESLPFGGKRLLEESNGERIKSFVQRLVATGKSSLPPSPCKVPP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1124 370 Gene3D Cytosolic phospholipase A2 catalytic domain 20 361 - -
Lja1g1124 370 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
Lja1g1124 370 Pfam Patatin-like phospholipase 31 233 IPR002641 GO:0006629
Lja1g1124 370 PANTHER PATATIN 2 370 - -
Lja1g1124 370 PANTHER PATATIN-LIKE PROTEIN 6 2 370 - -
Lja1g1124 370 SUPERFAMILY FabD/lysophospholipase-like 28 314 IPR016035 -
Lja1g1124 370 CDD Pat17_PNPLA8_PNPLA9_like 30 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1124 Lja-Chr1 11417358 11418994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1124 1 367 Acyl Lipid Metabolism Gene Families AT3G63200 70.667 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1124 - - gmx:100806989 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1124 1 11417358 11418994 Lja1g1124 1 11417358 11418994 ECH
Lja1g1124 1 11417358 11418994 Lja5g1981 5 25583659 25585686 PCT